Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b18f
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92780-2|CAB07177.1|  115|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z49908-3|CAA90094.2|  382|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ...    28   6.3  
AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    28   6.3  
Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U80955-5|AAG01559.2|  573|Caenorhabditis elegans Ferm domain (pr...    27   8.3  
U80955-4|ABB51180.1|  589|Caenorhabditis elegans Ferm domain (pr...    27   8.3  

>Z92780-2|CAB07177.1|  115|Caenorhabditis elegans Hypothetical
           protein C45G3.4 protein.
          Length = 115

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +2

Query: 266 KTVSIYDYPEHLNPFHEEDNHNKIRFWTIGRKLNRSNSITFSGIKDLKNSWAFRSFLKK- 442
           + V IYD PE+ N   +ED++ K R   IG    R   +            +  S ++K 
Sbjct: 21  EVVDIYDMPENNNAQEKEDHYTK-RAIDIGETKKRLELLPPPPTSSSPRPTSSNSIIQKS 79

Query: 443 -GKKGSQTQEK 472
            GK+  Q  EK
Sbjct: 80  DGKRKDQKNEK 90


>Z49908-3|CAA90094.2|  382|Caenorhabditis elegans Hypothetical
           protein C07E3.3 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 461 TQEKSKTNQANGDSSPILFRRAMHYSSMTPGNRSTVGSPERY-VYGGSVTPLPR 619
           T    + +Q   D SP L RR +      P  +S    P+R  V+GG V+PLPR
Sbjct: 136 TSSTRRYDQVPIDPSPELQRREV------PSKQSPPNYPKRSSVFGGRVSPLPR 183


>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
            protein Y38C9A.1 protein.
          Length = 1484

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 437  KKGKKGSQTQEKSKTNQANGDSSPILFRRAMHYSSMTPGNRSTVGS 574
            KK K+  +        QAN  +  I +  A HY+S +  N +T+ +
Sbjct: 1290 KKAKEAQRLAAAKLAQQANDQAQMIQWLNAAHYASPSTSNAATLSA 1335


>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 395 IKDLKNSWAFR-SFLKKGKKGSQTQEKSKTNQANGDSSPILFRRAMHYSSMT 547
           ++D  N W    SF ++GK G    E +  + ++G +SP   + A   +S+T
Sbjct: 196 LRDFGNHWPIECSFKQEGKLGQGCFEDNHKDCSSGSTSPTCPKNATAVASVT 247


>Z81460-2|CAB03831.1|  439|Caenorhabditis elegans Hypothetical
           protein C04A11.2 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/75 (18%), Positives = 30/75 (40%)
 Frame = +2

Query: 398 KDLKNSWAFRSFLKKGKKGSQTQEKSKTNQANGDSSPILFRRAMHYSSMTPGNRSTVGSP 577
           K ++    +   LKK    +   + S++   NG ++  + + +     +TP  R    S 
Sbjct: 85  KTVEKQAQYIQVLKKSLNSTSEMDSSESQHGNGSTASSVTKSSTRVQRVTPTKRDMASSG 144

Query: 578 ERYVYGGSVTPLPRS 622
                  + TP+ R+
Sbjct: 145 STSTSSSTSTPVVRN 159


>Z78064-8|CAO82042.1|  357|Caenorhabditis elegans Hypothetical
           protein F57B1.9a protein.
          Length = 357

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 252 VAAIITPENSQILFYIIHKRRQVSTTISALITLASYHKLICGIVLSER 109
           V A I PE+   L+Y I      ST IS L+T A    L+  ++L +R
Sbjct: 35  VDAEIPPEDKNFLYYFIIATFTASTIISTLLTGAF---LVASVILWKR 79


>U80955-5|AAG01559.2|  573|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 2,
           isoform a protein.
          Length = 573

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 413 SWAFRSFLKKGKKGSQTQEKSKTNQANGDSS-----PILFRRAMHYSSMTPGNRSTVGS 574
           SW  RS   +  +  Q Q+KS+T  A+ D+       +L     H + + P  R+ VGS
Sbjct: 2   SWMLRSLSARFSRNRQQQQKSQTQDASFDTKKFVQCKVLLLDGAHLNIVVP--RNAVGS 58


>U80955-4|ABB51180.1|  589|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 2,
           isoform b protein.
          Length = 589

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 413 SWAFRSFLKKGKKGSQTQEKSKTNQANGDSS-----PILFRRAMHYSSMTPGNRSTVGS 574
           SW  RS   +  +  Q Q+KS+T  A+ D+       +L     H + + P  R+ VGS
Sbjct: 18  SWMLRSLSARFSRNRQQQQKSQTQDASFDTKKFVQCKVLLLDGAHLNIVVP--RNAVGS 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,445
Number of Sequences: 27780
Number of extensions: 309256
Number of successful extensions: 714
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)