Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b18f
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    31   0.007
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.46 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   4.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 177 WWKLVAVCVLCKTIFVNFLV*LWQPQRVLAKRSLSTTT 290
           WW L+ V V C T+F N LV L     V+ +R+L T T
Sbjct: 188 WWALILVIVPCLTLFGNVLVIL----AVVRERALQTVT 221


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 258 PAVAAIITPENSQILFYIIHKRRQVSTTISALITLASYHKLICGIV 121
           P +AAI+      I+FYII  R    + +     + + H L+CGI+
Sbjct: 331 PPLAAIVLGAIGSIVFYII-SRYVFRSALEDYCNIVATH-LVCGIL 374


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 13/138 (9%)
 Frame = +2

Query: 212 NNICEFSGVIMAATAGPRK----TVSIYDYPEHLNPFHEEDNHNKIRFWTIGRKLNRSNS 379
           +N+ E++G+        RK    T++  +  E+      E N N+    T   + N + +
Sbjct: 421 SNMTEYNGLTEPKKDNKRKLSDSTMNKINNHEYKRSVSRESNSNQFILMTTVNEGNNNMA 480

Query: 380 ITFSG-----IKDLKNSWAFRSFLKK----GKKGSQTQEKSKTNQANGDSSPILFRRAMH 532
            T+       I+    +     F +K     K+   +Q+K+K N    +++P+L  R   
Sbjct: 481 ATYMNECLLNIQKSPRTLTLGIFAEKLRLETKELFSSQQKTKNNLMKLETTPVLPSRFQS 540

Query: 533 YSSMTPGNRSTVGSPERY 586
           + S+   N  +  S + Y
Sbjct: 541 HPSIDSANTISNSSLQDY 558


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 380 ITFSGIKDLKNSWAF 424
           +TF+G+ DL   W F
Sbjct: 79  MTFAGVNDLLGYWVF 93


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 563 TVGSPERYVYGGSVT 607
           TV    R +YGGSVT
Sbjct: 198 TVAETVRIIYGGSVT 212


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 458 QTQEKSKTNQANGDSSPILFRRAMHYSSMTPG 553
           QTQ + + +    D  P  ++ A+H     PG
Sbjct: 501 QTQSRVRAHLKRLDHQPYQYKIAVHSEQNVPG 532


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 530  HYSSMTPGNRSTVGSPERYVYGGSVTPLP 616
            HY S     R +VGS       GS  P P
Sbjct: 1833 HYGSRGSVGRRSVGSARNIPVSGSPEPPP 1861



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 244  GSHSGSSQNGLYLRLP 291
            GS S   QNG Y R+P
Sbjct: 1776 GSQSMPRQNGRYSRVP 1791


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,297
Number of Sequences: 438
Number of extensions: 3714
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)