Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b17f
         (602 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3J5J3 Cluster: Putative uncharacterized protein; n=1; ...    37   0.42 
UniRef50_A7HMU3 Cluster: CoA-binding domain protein; n=2; Thermo...    32   9.1  

>UniRef50_A3J5J3 Cluster: Putative uncharacterized protein; n=1;
           Flavobacteria bacterium BAL38|Rep: Putative
           uncharacterized protein - Flavobacteria bacterium BAL38
          Length = 779

 Score = 36.7 bits (81), Expect = 0.42
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = -2

Query: 394 ELFH*IHLALKINDHDNYKIDLSSSSIYSIQFQ-LKHAQNGRGQAGVQPYVQTNTTIVYI 218
           EL + ++L   I D D  + +L+ S IYS++F      +    +    P +  N T V I
Sbjct: 507 ELLYDLNLKTAIFDKDYKRANLALSKIYSLEFSSCIFDEMVFNEIKTNPKLVQNATAV-I 565

Query: 217 CKSIKIE*RPTKNYLEILIYSFTL*PKNCPM 125
           CK+  ++   T  +L+I +  F   PKN  +
Sbjct: 566 CKNFNLDYFKTTQFLKIWLEKFDSLPKNAQL 596


>UniRef50_A7HMU3 Cluster: CoA-binding domain protein; n=2;
           Thermotogaceae|Rep: CoA-binding domain protein -
           Fervidobacterium nodosum Rt17-B1
          Length = 285

 Score = 32.3 bits (70), Expect = 9.1
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 472 VSSGIRSVCGMSRNEVVRCLHNMQVYISTISQYVFR 579
           +  G   VCG+S+N   + +HN+ VY +T+S YV R
Sbjct: 26  IEYGTDIVCGVSKNNEFKEVHNVPVY-NTLSDYVSR 60


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,568,833
Number of Sequences: 1657284
Number of extensions: 10341560
Number of successful extensions: 23019
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23008
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)