Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b17f
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    31   0.13 
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    26   3.7  
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    26   4.9  

>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 135 FLGYNVNEYISISR*FFVGLYSILILLQMYTIVVFVWTYGCTPACPLPF 281
           FLGYN+ E+   S  +  G  +    L+ +TI +F+  +GC    P  F
Sbjct: 226 FLGYNMYEWCGHSDFYTSGYAARTQELENFTIPIFLSEFGCNKVTPRVF 274


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 579 PEYILTDGTYINLHIMQTSHNFVTTHSTYTSYARGNRFTF 460
           P++I     Y  +HI Q  H ++    TY +   GN   F
Sbjct: 144 PKWIYPLFHYFYIHIFQVLHLYLLASPTYIAMLAGNERAF 183


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 585 FHPEYILTDGTYINLHIMQTSH 520
           +  + IL DGT INL ++ T H
Sbjct: 100 YQTDIILEDGTKINLTVLDTPH 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,519
Number of Sequences: 5004
Number of extensions: 45962
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)