Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b17f
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26946| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_51700| Best HMM Match : DUF1225 (HMM E-Value=7.2)                   28   6.7  

>SB_26946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 227 CIHL*KYQNRVKAYKKLSRDTNIFVHVVT*KLSYVTHWGPGGRGIN 90
           C H+ K+Q +++ YK L RD       V+ +L     W    RGI+
Sbjct: 85  CNHVLKHQQKIRTYKHLLRDNASPQQTVSSRLKRHARWPTHTRGIS 130


>SB_51700| Best HMM Match : DUF1225 (HMM E-Value=7.2)
          Length = 121

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 159 YISISR*FFVGLYSILILLQMYTIVVFVWTY 251
           YI++S    V +Y +++LL MY+  +FV  Y
Sbjct: 5   YIALSPFVAVFIYPVIVLLAMYSAALFVNVY 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,132,459
Number of Sequences: 59808
Number of extensions: 327253
Number of successful extensions: 625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)