Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b16r
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    26   0.34 
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    26   0.34 
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   5.5  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   7.3  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   7.3  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 647 VNAFSDLPGEMLVLAARETVMHSLICLTQLNNN 549
           V  F+D+ G  L+L   ++++  L CL  + NN
Sbjct: 232 VALFNDVFGTCLILITGKSIVQLLTCLNFITNN 264


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 647 VNAFSDLPGEMLVLAARETVMHSLICLTQLNNN 549
           V  F+D+ G  L+L   ++++  L CL  + NN
Sbjct: 232 VALFNDVFGTCLILITGKSIVQLLTCLNFITNN 264


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 156 HNNYCYIG*NEDSMIL 203
           H NY ++G N+D  +L
Sbjct: 52  HVNYAFLGLNDDGSLL 67


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 493 CWARATDRFSSKEHAAT*VLLLSCVR 570
           CW   + + +SKE     + L +CVR
Sbjct: 492 CWVPHSCKLTSKEVPGETINLQTCVR 517


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 96  KKFNCAAISLVNEW 137
           +K N  AIS++N+W
Sbjct: 16  EKLNTLAISVMNQW 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,615
Number of Sequences: 336
Number of extensions: 3291
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)