Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b16r
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    41   2e-04
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    28   1.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   4.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   5.9  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   7.8  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   7.8  

>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
 Frame = -3

Query: 674 NIMLTMRVLVNAFSDLPGEMLVLAARETVMHSLICLTQLNNNTQVAACSLLLNLSVALAQ 495
           N+ML +R L N   ++     V    + +  S +       + ++A  +L +NLS+ L Q
Sbjct: 573 NVMLALRGLSNVVPNITDAEGVSKLMDCLT-STVPQASSAKDFKIAFATLAMNLSILLIQ 631

Query: 494 ---QPDSVELAECVLQLLNKIT-DNEAYFRGLVALGTLLAESPNKIQLQSKIVSHTQ--I 333
              +   +EL   +   L+  + DNEA++R L+ALGT L   P+ I L +  + H Q  +
Sbjct: 632 LNLENTGIELLSILFSFLDDPSPDNEAFYRALMALGT-LCTVPD-IALAASQIYHAQSIV 689

Query: 332 HSRLKRDS 309
           H   +R S
Sbjct: 690 HGIAERFS 697


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = -3

Query: 620  EMLVLAARETVMHSLICLTQLNNNTQVAACSLLLNLSVALAQQPDSVELAECVLQLLNKI 441
            EMLVL   + + H L  LT+    T     +LLL  +   AQ+ D + LA+ +  +++++
Sbjct: 1090 EMLVLLMNDGLKHDLDKLTEYAGRTFTTLKTLLLKDNDVEAQKLDHLFLAKLLFIIISQM 1149


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 235 FYKSLSTCWE-QIEIFLKVASLGFVVLSLFNLLC 333
           F    S C E +I +F +  SL   +LSLF+LLC
Sbjct: 104 FLCRFSNCSEDEIRLFKQHQSLDSFLLSLFDLLC 137


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 93  FKKFNCAAISLVNEWIYKNNVHNNYCYIG*N 185
           +KK  C+ +SL+ ++I  ++VH+    I  N
Sbjct: 529 YKKCKCSLLSLLKQYIKDSHVHHEVLLISLN 559


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/80 (20%), Positives = 34/80 (42%)
 Frame = -3

Query: 527 LLLNLSVALAQQPDSVELAECVLQLLNKITDNEAYFRGLVALGTLLAESPNKIQLQSKIV 348
           L  ++  A + Q   +EL       +  + +NE    G+  +  +L  +P K   +S+ +
Sbjct: 369 LTASIPFASSSQAKCIELISKGAYPIEPLLENEISEEGIDLINRMLEINPEKRISESEAL 428

Query: 347 SHTQIHSRLKRDSTTNPSDA 288
            H   ++    +  T PS +
Sbjct: 429 QHPWFYTVSTHEHRTPPSSS 448


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 551  NTQVAACSLLLNLSVALAQQPDSVELAECVLQLLNKITDN-EAYFRG 414
            NT + A S +LNL     +  D   L   ++Q+LN +  N  +Y  G
Sbjct: 1115 NTILTALSTILNLKELECEPKDHANLILKIIQILNGLLFNHRSYMSG 1161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,681
Number of Sequences: 5004
Number of extensions: 52230
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)