Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b16r
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 41 8e-04
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 29 2.7
05_04_0022 - 17217626-17217643,17217740-17217856,17217987-172181... 29 3.5
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 29 4.7
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 28 6.2
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 28 6.2
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 41.1 bits (92), Expect = 8e-04
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Frame = -3
Query: 692 PDNLPANIMLTMRVLVNAFSDLP--GEMLVLAARETVMHSLICLTQLNNNTQVAACSLLL 519
P P N++ T++ + N F D P + L + E + C T + N +A +LLL
Sbjct: 551 PPVQPPNVLTTLKAVTNLF-DKPCLHQWLRIHGMEIIDSVSSCKTTFSKNAHLAYSTLLL 609
Query: 518 NLSVALAQQPDSVELAECVLQLLNKITDN----EAYFRGLVALGTLLAESP-NKIQLQSK 354
N +V + D A+ + L D+ ++ +R LVA+G+L++ S + L +
Sbjct: 610 NYAVLSIESKDEQSQAQILSAALEIAEDDTQVADSKYRALVAIGSLVSFSMIHNTMLSTP 669
Query: 353 IVSHTQ 336
VS Q
Sbjct: 670 SVSQLQ 675
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.5 bits (63), Expect = 2.7
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Frame = -3
Query: 530 SLLLNLSVALAQQPDSVELAECV-LQLLNKITDNEAYFRGLVALGTLLAESPNKIQLQSK 354
SL L A+ + + E E V + +KI D E + LV LL+ NK++ K
Sbjct: 1138 SLNKQLEEAILKVSNLTEELETVQAETASKINDMETNTKDLVNTIVLLSSQKNKVEEHMK 1197
Query: 353 IVSHTQIH--SRLKRDSTTNPSDATLRKISI-CSQQVLR 246
I++ + S +K T R+I+I C QQ LR
Sbjct: 1198 IITEACMEKMSFMKDFEDQVKQKITDREIAIACLQQSLR 1236
>05_04_0022 -
17217626-17217643,17217740-17217856,17217987-17218112,
17218194-17218340,17218423-17218533,17218625-17218747,
17218827-17218958,17219157-17219252,17219532-17219653,
17219833-17220130,17220213-17220458,17220711-17220852,
17221068-17222105,17222183-17222262,17222558-17222800,
17222907-17222967,17224059-17224675
Length = 1238
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -3
Query: 689 DNLPANIMLTMRVLVNAFSDLPGEMLVLAARETVMHSLI-CLTQLNNNTQVAACSLLLNL 513
+NL + L ++ +A + L E+ L +MH+L+ CL Q +V A +LLL L
Sbjct: 666 NNLEEGVALAAILVRSAANSLLQEIKKLGGI-AIMHTLMACLHQTEPEHRVLAANLLLQL 724
Query: 512 SVALAQQPDSVELAECVLQLLNKITDNE 429
+ SV E + LL+ ++ E
Sbjct: 725 DMLDKPDGKSVFRDEAMEVLLDSLSSQE 752
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -2
Query: 669 NVDNASAGECVQRPPRRDAGAGR-QGNRYAFT 577
NVDN VQ+P +R AGAG+ +G ++A T
Sbjct: 643 NVDNTENKVEVQQPHKRTAGAGKGKGGKWART 674
>12_01_0222 -
1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = -3
Query: 623 GEMLVLAARETVMH-SLICLT-QLNNNTQVAACSLLLNLSVALAQQPDSVELAECVLQLL 450
G L A E + H L CL +N N+ AA +LN +A + + + +L L
Sbjct: 710 GSALASTAMEALGHIGLRCLLPSINRNSSQAALLTILNEKLAKLLSENDTKAKQKILISL 769
Query: 449 NKITDNEAYFRGL-VALGTLLAESPNKIQ 366
++ NE F L AL + + S +K++
Sbjct: 770 GHLSWNELSFAHLNNALDLIFSLSRSKVE 798
>11_01_0221 -
1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = -3
Query: 623 GEMLVLAARETVMH-SLICLT-QLNNNTQVAACSLLLNLSVALAQQPDSVELAECVLQLL 450
G L A E + H L CL +N N+ AA +LN +A + + + +L L
Sbjct: 706 GSALASTAMEALGHIGLHCLLPSINRNSSQAALLTILNEKLAKLLSENDTKAIQKILISL 765
Query: 449 NKITDNEAYFRGL-VALGTLLAESPNKIQ 366
++ NE F L AL + + S +K++
Sbjct: 766 GHLSWNELSFAHLNNALDLIFSLSRSKVE 794
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,991,079
Number of Sequences: 37544
Number of extensions: 331185
Number of successful extensions: 822
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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