Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b16r
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    32   0.34 
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    32   0.34 
U64840-2|AAB04960.1|  131|Caenorhabditis elegans Hypothetical pr...    31   0.79 
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AF149286-1|AAF99085.1|  782|Caenorhabditis elegans KRP95 protein.      27   9.7  
AC024810-9|AAF60766.1|  547|Caenorhabditis elegans Hypothetical ...    27   9.7  
AB017106-1|BAA88837.1|  607|Caenorhabditis elegans Kinesin like ...    27   9.7  

>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = -3

Query: 440 TDNEAYFRGLVALGTLLAESPNKIQ---LQSKIVSHTQIHSRLKRDSTT-NPSDATLRKI 273
           + N  YF+ LV++ TL + +PN +Q   L+S    H  +HS    D T+ N  D  L  +
Sbjct: 251 SSNLQYFKYLVSIPTLPSHAPNFLQQSDLESYRTPHAYLHSEGSEDGTSLNGHDGELLNL 310

Query: 272 SICSQQ 255
           +    Q
Sbjct: 311 AEAEPQ 316


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = -3

Query: 440 TDNEAYFRGLVALGTLLAESPNKIQ---LQSKIVSHTQIHSRLKRDSTT-NPSDATLRKI 273
           + N  YF+ LV++ TL + +PN +Q   L+S    H  +HS    D T+ N  D  L  +
Sbjct: 251 SSNLQYFKYLVSIPTLPSHAPNFLQQSDLESYRTPHAYLHSEGSEDGTSLNGHDGELLNL 310

Query: 272 SICSQQ 255
           +    Q
Sbjct: 311 AEAEPQ 316


>U64840-2|AAB04960.1|  131|Caenorhabditis elegans Hypothetical
           protein ZC317.2 protein.
          Length = 131

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +1

Query: 286 VASLGFVVLSLFNLLCICVCDTIFDCS*ILFGDSAKRV 399
           V  L F ++SLF  +C+C C  + DC+ I  GDS K V
Sbjct: 29  VIFLIFTIISLFVCICVC-CIDLGDCN-ICQGDSKKEV 64


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
           protein F20C5.2b protein.
          Length = 1130

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 441 DLVEELKHALGELHAVRLLGEGDRQV 518
           DL  +L   +GE+H V + G G R V
Sbjct: 181 DLTSKLTRTVGEIHEVMIRGNGHRSV 206


>Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical
           protein F20C5.2a protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 441 DLVEELKHALGELHAVRLLGEGDRQV 518
           DL  +L   +GE+H V + G G R V
Sbjct: 181 DLTSKLTRTVGEIHEVMIRGNGHRSV 206


>AF149286-1|AAF99085.1|  782|Caenorhabditis elegans KRP95 protein.
          Length = 782

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 441 DLVEELKHALGELHAVRLLGEGDRQV 518
           DL  +L   +GE+H V + G G R V
Sbjct: 181 DLTSKLTRTVGEIHEVMIRGNGHRSV 206


>AC024810-9|AAF60766.1|  547|Caenorhabditis elegans Hypothetical
           protein Y54E10A.12 protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 365 LQSKIVSHTQIHSRLKRDSTTNPSDATLRKISICSQQVLRLL 240
           +  KI SH+Q        S T P DAT++KI+   + + +LL
Sbjct: 91  IMEKISSHSQPSHHHTNASITLPYDATIQKIAEKEKNLSKLL 132


>AB017106-1|BAA88837.1|  607|Caenorhabditis elegans Kinesin like
           protein (klp-11) protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 441 DLVEELKHALGELHAVRLLGEGDRQV 518
           DL  +L   +GE+H V + G G R V
Sbjct: 144 DLTSKLTRTVGEIHEVMIRGNGHRSV 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,003,772
Number of Sequences: 27780
Number of extensions: 296233
Number of successful extensions: 676
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)