Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b16r
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.8  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.5  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   8.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.5  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 120 SLVNEWIYKNNVHNNYCYIG*NEDSMILNN 209
           SL N+ I+ NN +NN  Y   N ++   NN
Sbjct: 84  SLSNKTIHNNNNYNNNNYNNYNYNNNNYNN 113


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 120 SLVNEWIYKNNVHNNY 167
           SL N+ I+ NN +NNY
Sbjct: 306 SLSNKTIHNNNNYNNY 321


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 274 IFLKVASLGFVVLSLFNLLC 333
           I + V SLG ++L+L  +LC
Sbjct: 136 IVIGVTSLGLLLLALVAVLC 155


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 274 IFLKVASLGFVVLSLFNLLC 333
           I + V SLG ++L+L  +LC
Sbjct: 107 IVIGVTSLGLLLLALVAVLC 126


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
 Frame = +3

Query: 504 GDRQVQ*QGTRRYLSVVIELCEAYE*MHNGFPG------GQHQHLSGEVAERIHQHSHCQ 665
           GD +++ + ++  L+ V++L +     HN          G H H  G     IH   H  
Sbjct: 374 GDLELRQRSSKSLLANVLDLEDNALASHNNLLNNVYSTPGPHHHTMGHGHSHIHATPHHH 433

Query: 666 H 668
           H
Sbjct: 434 H 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,446
Number of Sequences: 438
Number of extensions: 4136
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)