Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b16f
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    28   0.058
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   0.94 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   0.94 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   0.94 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   0.94 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   0.94 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   0.94 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   0.94 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   0.94 
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   2.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   3.8  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   3.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   5.0  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   8.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   8.8  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 28.3 bits (60), Expect = 0.058
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 8   EIGGFKVSELPGPEVLLEPGKSDG---QTKLVRRGAAVKCYSWSVAENTWNE 154
           +I G K  ++ G E  L   ++D     T+L  R AA+    WS   NTW E
Sbjct: 505 KIAGDKKGQVLGAEAALWTEQADSASVDTRLWPRAAALGEVLWSEPTNTWRE 556


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 105 PRSSATRGASPRTRGTR*ATSWEPTPPARGRPCTRGRNTTSYLASTSKT 251
           P S+ +   + ++ G     S   +PP +    T  +N +S  +STS T
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASSTSST 176


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 105 PRSSATRGASPRTRGTR*ATSWEPTPPARGRPCTRGRNTTSYLASTSKT 251
           P S+ +   + ++ G     S   +PP +    T  +N +S  +STS T
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 105 PRSSATRGASPRTRGTR*ATSWEPTPPARGRPCTRGRNTTSYLASTSKT 251
           P S+ +   + ++ G     S   +PP +    T  +N +S  +STS T
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 105 PRSSATRGASPRTRGTR*ATSWEPTPPARGRPCTRGRNTTSYLASTSKT 251
           P S+ +   + ++ G     S   +PP +    T  +N +S  +STS T
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 105 PRSSATRGASPRTRGTR*ATSWEPTPPARGRPCTRGRNTTSYLASTSKT 251
           P S+ +   + ++ G     S   +PP +    T  +N +S  +STS T
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 105 PRSSATRGASPRTRGTR*ATSWEPTPPARGRPCTRGRNTTSYLASTSKT 251
           P S+ +   + ++ G     S   +PP +    T  +N +S  +STS T
Sbjct: 84  PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 132


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 105 PRSSATRGASPRTRGTR*ATSWEPTPPARGRPCTRGRNTTSYLASTSKT 251
           P S+ +   + ++ G     S   +PP +    T  +N +S  +STS T
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 105 PRSSATRGASPRTRGTR*ATSWEPTPPARGRPCTRGRNTTSYLASTSKT 251
           P S+ +   + ++ G     S   +PP +    T  +N +S  +STS T
Sbjct: 128 PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTASQNLSSPASSTSST 176


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 267 LIGGAPSLMSTLNTKSYSFPWYMVFPSLAGL-APMTSPIS 151
           L GGA +   TL+   Y   WY+   S   + AP T+ I+
Sbjct: 233 LSGGASASKVTLSVPFYGHSWYLQSTSNHDVGAPATTGIA 272


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +2

Query: 44  PEVLLEPGKSDGQTKLVRRGAAVKCYS---WSVAENTWNE 154
           PE+ ++  +    T L+  G+ V C S   WS    T N+
Sbjct: 88  PEIKIQISQQQSVTALLDTGSEVSCISEEVWSKLIETGNK 127


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -3

Query: 276 YGSLIGGAPSLMSTLNTKSYSFPWYMVFPSLAG 178
           +G   GGAP L+S         P +  FP   G
Sbjct: 193 FGIFPGGAPPLVSPFLAAMAHRPPHFAFPGAPG 225


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -3

Query: 501  SRDEGGGRPGTAVPEPGTYRDSPVRGSAKPLLEAGSES 388
            S  EG    GTAVP P         GS  P +    ES
Sbjct: 1099 SSSEGVPLKGTAVPPPSGSSGPGSTGSKSPPVAGFEES 1136


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
 Frame = +2

Query: 281 KTEDPWAAAQAFIHRNDLPQGYLEQVANFIITNA--KLDSLPASSN-GFADPLTGESR-Y 448
           +T+  +  +  F    ++PQ  ++Q        A  K+   PAS    F     G S   
Sbjct: 30  ETDPDFHESTMFNGGGEIPQNIIQQQPQQARRRAFVKIIEQPASKALRFRYECEGRSAGS 89

Query: 449 VPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAISTEKPFVPH 571
           +PG+ +       PS +       A V  + ++ ++PF PH
Sbjct: 90  IPGASSTPENKTFPSIQVMGYQGRAVVVVSCVTKDEPFRPH 130


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 276 YGSLIGGAPSLMSTLNTKSYSFP 208
           +GS  GG+ S M+ L +  Y  P
Sbjct: 20  FGSTCGGSSSSMAYLKSAPYPVP 42


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 289 GPLGGGASLHPQK*PAAG 342
           G +  GAS+ PQ  P AG
Sbjct: 79  GDMTHGASISPQNTPPAG 96


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 289 GPLGGGASLHPQK*PAAG 342
           G +  GAS+ PQ  P AG
Sbjct: 79  GDMTHGASISPQNTPPAG 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,743
Number of Sequences: 336
Number of extensions: 2829
Number of successful extensions: 19
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)