Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b16f
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...   132   6e-32
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    30   0.33 
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   0.44 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.58 
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    29   0.77 
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   1.3  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   1.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   1.8  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   2.3  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   5.4  

>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score =  132 bits (318), Expect = 6e-32
 Identities = 61/131 (46%), Positives = 82/131 (62%)
 Frame = +2

Query: 5   QEIGGFKVSELPGPEVLLEPGKSDGQTKLVRRGAAVKCYSWSVAENTWNEIGDVMGANPA 184
           QE+G  K   LPG E+L +PGK+DG   +VR    V+ Y WS  EN W +IG V+ A   
Sbjct: 309 QEVGDIKKGSLPGLEILSKPGKADGDVVMVRVNNDVEAYQWSQKENEWKKIGQVVDA-VG 367

Query: 185 SEGKTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWAAAQAFIHRNDLPQGYLEQVAN 364
           +  K +++GKEYD+VF VD+ DG  P+KLPYN TE+P+ AA  F+  N LP  Y ++V  
Sbjct: 368 NNRKQLFEGKEYDYVFDVDVADGQAPLKLPYNATENPYQAANRFLELNQLPLSYTDEVVK 427

Query: 365 FIITNAKLDSL 397
           FI  N +  SL
Sbjct: 428 FIEKNTQGHSL 438


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
 Frame = +2

Query: 386 LDSLPA------SSNGFADPLTGESRY-VPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAI 544
           +D LPA      +S   A P + ++ Y  P S       PP S R+   GSG       I
Sbjct: 29  IDDLPALPQDRTTSTYRATPSSADAGYNAPSSTFESVRSPPESRREGGMGSGYQRDAIPI 88

Query: 545 STEKPFVPHDSYIRFD 592
            +E PF  H   + FD
Sbjct: 89  PSEPPFTAHVGNLSFD 104


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 567 GTKGFSVDMAACVT*APEPVKGSRDEGGGRPGTAVPEPGTYRDSPVRGSA--KPLLEAGS 394
           G K  +++ AA +  + + V+     G G   T +P PG+    P  GSA  KP   + +
Sbjct: 533 GGKKSAIEAAAPIPTSADTVESKHAAGSGS-ATTIPSPGSATTKPTPGSATTKPTPVSAT 591

Query: 393 ESNFA 379
           E + A
Sbjct: 592 EEHAA 596


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 425  PLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAISTEK-PFVPHDS 577
            P   E+  VP     VP +PPPS+  P     A +    + T K P VP  S
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 545 STEKPFVPHDSYIRFDQANIKAIYDKLREFN 637
           S  K   P D+++ F+  N + IY+  R FN
Sbjct: 224 SWAKKITPEDAHVNFESMNTQQIYNMSRAFN 254


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 339 CGRSFLWMKACAAAQGSSVLLYGSLIGGAP 250
           CG +F+WMK   AA+ +   L G+ I G P
Sbjct: 148 CGFAFVWMKDRKAAEEAMNSLNGTEIDGRP 177


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 102 APRSSATRGASPRTRGTR*ATSWEPTPPARGRPCTRGRN 218
           AP +S    A   +RG+  A++  P  PARG P T   N
Sbjct: 280 APYASTPSAAVGSSRGSTPASATVPISPARGFPTTSAYN 318


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 467 AVPGLPPPSSRDPFTGSGAYVTQAAISTEKPFVPHDSYIRFDQANIKAI-YDKLREFN 637
           A+P +P  SS      SGA+   A    ++  +  D YI F Q   K + Y   +E+N
Sbjct: 109 AIPSIPEESSSFMLLNSGAFSRLALFQKDELALLLDLYINFLQGLKKTVLYWLCKEYN 166


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 392  SLPASSNGFADP---LTGESRYVP-GSGTAVPGLPPPSSRDPFT 511
            S+ AS+   A P     GE+ + P  SGT VP +  PS  +P+T
Sbjct: 915  SMTASAPAIASPPPPKVGETYHPPTASGTRVPPVQQPSHPNPYT 958


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 389 DSLPASSNGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAIS--TEKPF 562
           DS PA+SN  + P TG S   P    A       ++     G+G    + A +  T KP 
Sbjct: 254 DSKPAASNTGSAPTTGFSFGKPAGQAASTATDKGTTTTSSAGTGFSFGKPATTEDTNKPT 313

Query: 563 VPHDSYIR 586
            P+ ++ +
Sbjct: 314 APNSAFTK 321


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 23/76 (30%), Positives = 33/76 (43%)
 Frame = +3

Query: 30   PSYRVRKCYWSPASPTARRSWCGEAPRSSATRGASPRTRGTR*ATSWEPTPPARGRPCTR 209
            PSY      +SP SP+   +    +P S +    SP    T  + S+ PT P+   P + 
Sbjct: 1576 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPT--SPSYSPTSPSYS-PTSP 1632

Query: 210  GRNTTSYLASTSKTEP 257
              + TS   S S T P
Sbjct: 1633 SYSPTS--PSYSPTSP 1646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,567
Number of Sequences: 5004
Number of extensions: 45066
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)