Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b16f
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 137 6e-33
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 32 0.46
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 31 0.80
08_02_1334 - 26224546-26225337 30 1.4
04_01_0414 - 5487688-5488004,5488179-5488382,5488895-5489210 30 1.4
04_04_0009 + 22134160-22134696 30 1.8
08_01_0662 + 5714108-5714147,5714336-5715669,5716482-5716673,571... 29 3.2
08_01_0021 + 161613-162236 29 4.2
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 29 4.2
12_02_0848 + 23636478-23638058 28 5.6
06_03_0078 + 16291254-16291532,16291654-16291725 28 5.6
05_05_0392 + 24629528-24630442 28 5.6
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 28 5.6
10_08_0603 - 19120434-19120538,19121209-19121310,19121430-191214... 28 7.4
10_07_0135 + 13308839-13308899,13310146-13310495,13310574-133107... 28 7.4
08_02_0928 - 22688277-22688648,22689378-22689443,22689543-226895... 28 7.4
08_01_0104 + 745114-745584,745657-745718,745804-745910,746091-74... 28 7.4
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 28 7.4
03_01_0286 - 2208242-2208249,2208399-2208506,2209482-2210226 28 7.4
06_01_0835 - 6315762-6316844 27 9.8
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835... 27 9.8
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 27 9.8
04_01_0431 - 5655525-5655896 27 9.8
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601... 27 9.8
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 27 9.8
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 137 bits (332), Expect = 6e-33
Identities = 84/220 (38%), Positives = 121/220 (55%), Gaps = 10/220 (4%)
Frame = +2
Query: 11 IGGFKVSELPGPEVLLEPGKSDGQTKLVRRGAAVKCYSWSVAENTWNEIGDVM---GANP 181
+GG K+S+LPG E L PG SDGQT +VR G YSW+ E W++IG+V+ G
Sbjct: 241 VGGLKLSDLPGIEALQVPGNSDGQTLIVREGDNGVAYSWNSKELKWDKIGEVVDGPGDAA 300
Query: 182 ASEGKTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWAAAQAFIHRNDLPQGYLEQVA 361
A+ G+ + G YDFVF+VDI DG P KLPYN+++DP+A A ++ + +LP Y +QV
Sbjct: 301 AAPGQ-FHDGVRYDFVFNVDIGDGEPMRKLPYNRSDDPYAVADKWLLKENLPLTYRQQVV 359
Query: 362 NFIITNAKLDSLPASSNGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYV---- 529
FI+ N+ G++ +VP PS RDP+TG+ AYV
Sbjct: 360 EFILQNS-----------------GQNNFVPD----------PSFRDPYTGANAYVPGQS 392
Query: 530 TQAAISTEKP---FVPHDSYIRFDQANIKAIYDKLREFNS 640
+ +S KP +P + + F+ A + I KL EFN+
Sbjct: 393 ASSTVSAPKPTFKHIPKNGMLTFETAQFEGILKKLSEFNA 432
>03_03_0008 -
13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 31.9 bits (69), Expect = 0.46
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Frame = +2
Query: 131 VAENTWNEIGDVMGANPASEGKTMYQGKEYD-FVFSVDIKDGAPPIKLPYNKTEDPWAAA 307
VA N+ + P+ EG++ ++ KEY V ++D++ PP K + E A +
Sbjct: 410 VANTVSNQSSKLYMPGPSGEGQSAWKNKEYQPKVLTLDVEAALPPSKRLHRALE---AMS 466
Query: 308 QAFIHRNDLPQGYLEQVANFIITNAKLDSLPASSNGFADPLTGESRYVPGSGTAVPGLPP 487
N+LP+ + +I N + S + SN AD + + +G+A+ P
Sbjct: 467 ANVAETNNLPE---VTGSKQLIPNGFVASENSHSNKSADAVVTAT-----NGSAIAESPR 518
Query: 488 PS 493
PS
Sbjct: 519 PS 520
>06_01_0497 +
3555919-3557154,3557815-3558143,3558177-3558775,
3558919-3560393
Length = 1212
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/46 (47%), Positives = 24/46 (52%)
Frame = +3
Query: 57 WSPASPTARRSWCGEAPRSSATRGASPRTRGTR*ATSWEPTPPARG 194
WS + A RSWC RS+ATRGA RGT P PPA G
Sbjct: 509 WSMCTVHAARSWC----RSAATRGA---RRGT------SPLPPASG 541
>08_02_1334 - 26224546-26225337
Length = 263
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +2
Query: 389 DSLPASSNGFA---DPLTGESRYVPGSGTAVPGLPPPSSRDP 505
D LP+SS G DPL + +P TA P PPP P
Sbjct: 92 DQLPSSSGGGGEGGDPLVRRAVSLPAPVTATPPPPPPPPETP 133
>04_01_0414 - 5487688-5488004,5488179-5488382,5488895-5489210
Length = 278
Score = 30.3 bits (65), Expect = 1.4
Identities = 29/105 (27%), Positives = 43/105 (40%)
Frame = -3
Query: 492 EGGGRPGTAVPEPGTYRDSPVRGSAKPLLEAGSESNFAFVIMKLATCSKYPCGRSFLWMK 313
+ GGR G + GT R PV AK L + FAF + + S
Sbjct: 139 DSGGREGLREADHGTPRRVPVEERAKVLNPLQRDDIFAFFLHSSSALS------------ 186
Query: 312 ACAAAQGSSVLLYGSLIGGAPSLMSTLNTKSYSFPWYMVFPSLAG 178
A A+ SS + L+ G +S +TK +S +Y + S+ G
Sbjct: 187 VLAKAKDSSTIALQGLLPGTFVPVSYCSTKKWSSHYYEIGFSMTG 231
>04_04_0009 + 22134160-22134696
Length = 178
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 401 ASSNGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAIS 547
+SS+ +D G + G TA P PP SS G G+ + +AA S
Sbjct: 41 SSSSSGSDMEKGRGKACGGGSTAPPPPPPSSSGKSGGGGGSNIREAAAS 89
>08_01_0662 +
5714108-5714147,5714336-5715669,5716482-5716673,
5716769-5716958,5717398-5717477
Length = 611
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Frame = +3
Query: 33 SYRVRKCYWSPAS--PTARRSWCGEAPRSSATRGASPRTRGTR*ATSWEPTPPARGRP 200
S R W P A RS G R+S G PR R T W P +G P
Sbjct: 21 SRRTTTARWVPRDRPEPAGRSGTGAPGRASHALGQMPRRRTTTTTARWVPRQGQKGEP 78
>08_01_0021 + 161613-162236
Length = 207
Score = 28.7 bits (61), Expect = 4.2
Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 7/136 (5%)
Frame = +2
Query: 221 DFVFSVDIKDGAPPIKLPYNKTEDPWAAAQAFIHRNDLPQGYLEQVA--NFIITNAKLDS 394
DF+ V GAPP P + P AQ + P +Q A + A ++
Sbjct: 65 DFMSVVQRLTGAPPTAPPQPQPHHPTLLAQ-MPPQPSFPFHLQQQDAWPQQQHSPAAIEQ 123
Query: 395 LPASSNGFADPLTGESRYVPGSGTAVPGLP-----PPSSRDPFTGSGAYVTQAAISTEKP 559
A S+G AD S P GT +P +P PPS P GA T +A + P
Sbjct: 124 AAARSSG-ADLPPLPSILSPVPGTVLPAIPASFFSPPSLISPVPFLGATTTSSAAPSTSP 182
Query: 560 FVPHDSYIRFDQANIK 607
S +D N++
Sbjct: 183 SPMGGSAYYWDLFNMQ 198
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 27 CPSYRVRKCYWSPASPTARRSWCGEAPRSSATRGA 131
CPS V+K PA P AR GEA +S GA
Sbjct: 443 CPSLLVKKDRGRPADPKARPKAFGEATIASDVPGA 477
>12_02_0848 + 23636478-23638058
Length = 526
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/71 (33%), Positives = 29/71 (40%)
Frame = +3
Query: 21 SKCPSYRVRKCYWSPASPTARRSWCGEAPRSSATRGASPRTRGTR*ATSWEPTPPARGRP 200
S P VR+ + PA T G+ P ASP +TS P PP RGRP
Sbjct: 37 SPSPDVAVRRDGFLPAV-TLPVQRAGDTPPPPPIIDASPPPP----STSPPPPPPRRGRP 91
Query: 201 CTRGRNTTSYL 233
R R Y+
Sbjct: 92 ARRDRCAGRYV 102
>06_03_0078 + 16291254-16291532,16291654-16291725
Length = 116
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 75 TARRSWCGEAPRSSATRGASPRTRGTR*ATSWEPTPPARG 194
T+ S CG R +A +S T TR A +W P PP+ G
Sbjct: 25 TSYSSSCGPIRRHAAVALSSTTTTTTRFA-AWSPPPPSGG 63
>05_05_0392 + 24629528-24630442
Length = 304
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/65 (30%), Positives = 26/65 (40%)
Frame = -3
Query: 522 APEPVKGSRDEGGGRPGTAVPEPGTYRDSPVRGSAKPLLEAGSESNFAFVIMKLATCSKY 343
+P P R E G RP P P T R R +A AG+ + A +
Sbjct: 172 SPSPPPPPRREPGERPTRRSPSPATKRPPDQRRTA---ASAGAAAGAASGPQRKPPVPPR 228
Query: 342 PCGRS 328
PCGR+
Sbjct: 229 PCGRA 233
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 60 SPASPTARR-SWCGEAPRSSATRGASPRTRGTR*ATSWEPTPPA 188
+PA P + + G AP+++A G +P+ T +S P+P A
Sbjct: 24 APAGPARKAPAAAGPAPKATAPAGPAPKATATAAPSSKAPSPAA 67
>10_08_0603 -
19120434-19120538,19121209-19121310,19121430-19121462,
19122049-19122216,19122311-19122373,19122514-19122624,
19122926-19123035,19123150-19123446,19123632-19123710,
19123811-19123919,19124000-19124041,19124743-19124873,
19126150-19126797
Length = 665
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 22 QSVRVTGSGSATGARQVRRPDEAGAERRRG 111
+ V V G G R+ RP AG RRRG
Sbjct: 37 EEVEVGRGGGGGGGRRSGRPSPAGTPRRRG 66
>10_07_0135 +
13308839-13308899,13310146-13310495,13310574-13310709,
13310806-13310942,13311041-13311164,13313393-13313871
Length = 428
Score = 27.9 bits (59), Expect = 7.4
Identities = 25/65 (38%), Positives = 28/65 (43%)
Frame = +3
Query: 6 KKLVDSKCPSYRVRKCYWSPASPTARRSWCGEAPRSSATRGASPRTRGTR*ATSWEPTPP 185
+KL + P Y V SP T RRS G PRS SPR R + S P P
Sbjct: 363 EKLQQLQDPKYNVT----SPQVDTRRRSSSGSVPRSPMRMQPSPR----RLSASASPL-P 413
Query: 186 ARGRP 200
A G P
Sbjct: 414 AAGSP 418
>08_02_0928 -
22688277-22688648,22689378-22689443,22689543-22689591,
22689677-22689684
Length = 164
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 75 TARRSWCGEAPRSSATRGASPRTRGTR*ATSWEPTPPARGRPC 203
TAR C + S +G +P TRG AT P R RPC
Sbjct: 36 TARLPTCQSTVQLSRDQGDAP-TRGCVAATGCRRAPQRRRRPC 77
>08_01_0104 +
745114-745584,745657-745718,745804-745910,746091-746186,
746326-746375
Length = 261
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Frame = +2
Query: 344 YLEQ--VANFIITNAKLDSLPASSNGFADPLTGESRYVPGSGTAVPG-LPPPSSRDPFTG 514
YLE + K+ + +N F PLT + S + G +PPP DP +
Sbjct: 179 YLENSGCVGMCVNMCKIPTQNFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPLEEDPASK 238
Query: 515 SGAYVTQAAIST-EKPFVP 568
Y +IST P P
Sbjct: 239 QPCYANLCSISTPSAPICP 257
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +3
Query: 66 ASPTARRSWCGEAPRSSATRGASPRTRGTR*ATSWEPTPPARGRP 200
+S T S C P SS + S A+SW P PP RG P
Sbjct: 453 SSSTYSSSSCPPEPTSSTSGSTSSWVPPRDNASSWAP-PPPRGNP 496
>03_01_0286 - 2208242-2208249,2208399-2208506,2209482-2210226
Length = 286
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 202 HGLPLAGGVGSHDVAYLVPRVLGDA 128
HG+P GG+G A V VLG A
Sbjct: 239 HGIPHGGGIGGQQTAKTVAIVLGGA 263
>06_01_0835 - 6315762-6316844
Length = 360
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +2
Query: 374 TNAKLDSLPASSNGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGS 517
+++ + + + ++ PL ES Y+P S + +PPP++ T S
Sbjct: 49 SSSSISTTTTTPFSYSSPLPQESYYLPASSSYAAIVPPPTTTTNTTTS 96
>05_07_0236 -
28582157-28582552,28582639-28582911,28583324-28583560,
28583653-28583694,28583782-28583964,28584393-28584524,
28585605-28586057
Length = 571
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 398 PASSNGFADPLTGESRYVPGSGTAVPGLPPPSS 496
P+ S P+ R V G G P +PPPSS
Sbjct: 70 PSPSTSPNVPVNPSERPVQGKGHPAPTMPPPSS 102
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 105 PRSSATRGASPRTRGTR*ATSWEPTPPARGRPCTRGRNTTSYLASTSKTEP 257
P +R ASP + ++ P PP P + + TS A+TS + P
Sbjct: 317 PPMPRSRSASPSPSTSSSGSAGPPAPPPPPPPAAKRTSRTSTPATTSSSAP 367
>04_01_0431 - 5655525-5655896
Length = 123
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -3
Query: 498 RDEGGGRPGTAVPEPGTYRDSPVRGSAKP---LLEAGSESNFAFVIM 367
RD GG G + GT++ G A P + E GS+S A V+M
Sbjct: 25 RDAAGGGGGGPMAGSGTWQGGGGSGGAPPGSGVPEVGSDSRMARVVM 71
>02_05_0968 +
33156585-33156941,33158510-33159902,33160035-33160118,
33160216-33160265
Length = 627
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Frame = +3
Query: 111 SSATRGASPRTRGTR*ATSWEPTPPARG-RPCTRGRNT------TSYLASTSKTEPRLLS 269
S+AT+ + P G R A S EP PP RP T G + T A+T+ +PR+ S
Sbjct: 153 STATKSSLPDA-GARRALSQEPPPPPTSERPTTAGAGSHRVARVTGGGATTTAPKPRVFS 211
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 434 GESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAISTEKPFVPHDSYIRF--DQANIK 607
G S+ G A PPPSS + T+ +++P+ + DQ +++
Sbjct: 663 GSSKSFVSIGGAANASPPPSSSSSSPARSSGSTEQPHRSKRPWAETTTTTTSGRDQDHLE 722
Query: 608 AIYDKLRE 631
A+YD +R+
Sbjct: 723 ALYDAVRD 730
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,171,639
Number of Sequences: 37544
Number of extensions: 390622
Number of successful extensions: 1858
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1851
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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