Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b16f
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56375| Best HMM Match : No HMM Matches (HMM E-Value=.) 112 2e-25
SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68) 31 0.62
SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42) 31 1.1
SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12) 30 1.9
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18) 29 2.5
SB_53377| Best HMM Match : VRP1 (HMM E-Value=3.4) 29 3.3
SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_33825| Best HMM Match : Bacteriocin_II (HMM E-Value=5.5) 29 3.3
SB_10016| Best HMM Match : FliG_C (HMM E-Value=0.6) 29 3.3
SB_54745| Best HMM Match : ChaB (HMM E-Value=5.6) 29 4.3
SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14) 29 4.3
SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017) 29 4.3
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_44967| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 28 7.6
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_49011| Best HMM Match : Gemini_mov (HMM E-Value=9) 28 7.6
SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37) 28 7.6
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14) 28 7.6
SB_26289| Best HMM Match : TLD (HMM E-Value=0.08) 28 7.6
>SB_56375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 112 bits (270), Expect = 2e-25
Identities = 64/130 (49%), Positives = 82/130 (63%), Gaps = 11/130 (8%)
Frame = +2
Query: 155 IGDVMGANPASEG-------KTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWAAAQA 313
IG+V+GA P SEG KTMY+GKEYD+VFSV+I++G PP+KLPYN T+DPW AA
Sbjct: 1 IGEVVGA-PGSEGTAASSSNKTMYKGKEYDYVFSVEIQEGKPPLKLPYNVTDDPWVAAHN 59
Query: 314 FIHRNDLPQGYLEQVANFIITN-AKLDSLPASSNGFADPLTGESRYVPGSGTAVPGLPPP 490
F+ NDL Q +L+QV +FI N A + P S DP TG Y P G+A P +
Sbjct: 60 FLEANDLSQMFLDQVVSFIQKNTANVTIGPPGS--ACDPFTGGGSYRPSYGSAGPPIVSA 117
Query: 491 S---SRDPFT 511
+ + DPFT
Sbjct: 118 NIGGAADPFT 127
>SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 31.9 bits (69), Expect = 0.47
Identities = 22/55 (40%), Positives = 28/55 (50%)
Frame = +2
Query: 392 SLPASSNGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAISTEK 556
+LP + +G P T +R VP SG+ PG P S P T SG VT ST +
Sbjct: 561 TLPVTLSGTMTPGTTTNRTVPLSGSLTPGTPTGSR--PVTLSGT-VTAGTSSTSR 612
>SB_41218| Best HMM Match : zf-C2H2 (HMM E-Value=0.68)
Length = 807
Score = 31.5 bits (68), Expect = 0.62
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Frame = +2
Query: 245 KDGAPPIKLPYNKTEDPWAAAQAFIHRNDLPQGYLEQVANFIITNAKLDSLPASSNGFAD 424
+ G P ++P + P A D Q V ++ LD L +++
Sbjct: 601 ESGVPNSQVPSDSVH-PVENTSAISQNLDASQEQSVTVEGMSAVSSALDQLIMTTSAVNS 659
Query: 425 PLT--GESRYVPGSGTAVPGLPPPS-SRDPFTGSGAYVTQAAISTEKPFVPHDSYI 583
+T ES P TA P + PP+ S PFT S Y Q++ KP HDS +
Sbjct: 660 HMTMSSESPIQPAVVTARPPIEPPTHSSAPFT-STPYTPQSSQVKSKP-ADHDSIL 713
>SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)
Length = 1451
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 174 PTPPARGRPCTRGRNTTSYLASTSKTEPRLLSF 272
PT PA RP T NT+S +T+ T PR S+
Sbjct: 121 PTVPATVRPATLPTNTSSPPVTTTTTTPRTTSY 153
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 174 PTPPARGRPCTRGRNTTSYLASTSKTEPRLLSF 272
PT PA RP T NT+S +T+ T PR S+
Sbjct: 638 PTVPATVRPATLQTNTSSPPVTTTATTPRTTSY 670
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 174 PTPPARGRPCTRGRNTTSYLASTSKTEPRLLSF 272
PT PA RP T NT+S +T+ T PR S+
Sbjct: 1117 PTVPATVRPATLPTNTSSPPVTTTATTPRTTSY 1149
>SB_43199| Best HMM Match : Mab-21 (HMM E-Value=5.7e-12)
Length = 364
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 8 EIGGFKVSELPGPEVLLEPGKSDGQTKLVRRGAAVKCYSWSVAENTW 148
+ G F +L GP V L+ K DG+T V A K W A N W
Sbjct: 151 QYGSFISQKLNGPAVTLKIDK-DGKTYAVDLTFAFKVNEWPSAANEW 196
>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
Length = 2111
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 464 TAVPGLPPPSSRDPFTGSGAYVTQAAISTEKPFVPHDSYIRFDQ--ANIKAIYDKLREFN 637
TA +P S D SG Y+ +A + + V + +YI + N+ +YD++ FN
Sbjct: 71 TATYVIPSKISLDLNLTSGVYLLKARVFNDASSVQNQTYITVTERVQNVTWVYDRIATFN 130
>SB_53377| Best HMM Match : VRP1 (HMM E-Value=3.4)
Length = 335
Score = 29.1 bits (62), Expect = 3.3
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = +2
Query: 278 NKTEDPWAAAQAFIHRNDLPQGYLEQVANFIITNAKLDSLPASSNGFADPLT--GESRYV 451
N+ E+P A Q Q V ++ LD L +++ +T ES
Sbjct: 145 NQVEEPLADRQFSSELASQEQSVT--VEGMSAVSSALDQLIMTTSAVNSHMTMSSESPIQ 202
Query: 452 PGSGTAVPGLPPPS-SRDPFTGSGAYVTQAAISTEKPFVPHDSYI 583
P TA P + PP+ S PFT S Y Q++ KP HDS +
Sbjct: 203 PAVVTARPPIEPPTHSSAPFT-STPYTPQSSQVKSKP-ADHDSIL 245
>SB_51875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 170 GANPASEGKTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWA 301
G+ A G+ YQ F+F++ K+G P KLP +T D A
Sbjct: 97 GSQEAVSGRG-YQSSTKSFLFTLRNKNGYRPEKLPLKRTPDEQA 139
>SB_33825| Best HMM Match : Bacteriocin_II (HMM E-Value=5.5)
Length = 243
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 369 MKLATCSKYPCGRSFLWMKACA 304
MKL+T SK+P + FL MK C+
Sbjct: 17 MKLSTYSKFPISKLFLGMKFCS 38
>SB_10016| Best HMM Match : FliG_C (HMM E-Value=0.6)
Length = 198
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 236 VDIKDGAPPIKLPYNKTEDPWAAAQAFIHRNDL 334
+DI D A PIK+ + EDP A Q+ + R L
Sbjct: 66 IDIGDTAIPIKIDNLEVEDPLATKQSKVRRQKL 98
>SB_54745| Best HMM Match : ChaB (HMM E-Value=5.6)
Length = 420
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 480 RPGTAVPEPGTYRDSPVRGSAKPLLEAG 397
RPGT++ +PGT + P G +P+ +AG
Sbjct: 144 RPGTSLKKPGTGQGGPTPG-VRPMSQAG 170
>SB_30622| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-14)
Length = 856
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 38 PGPEVLLEPGKSDGQTKLVRRGAAVKCYS 124
PGPE+L PG+ + L R AA K S
Sbjct: 825 PGPEILDTPGQEERSANLTRSVAAAKLLS 853
>SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 116 CYSWSVAENTWNEIGDVMGANPASEGKTMYQGKEYDF 226
C +W +N +++ + A A+ T+YQG + F
Sbjct: 89 CQNWEAYDNIKSQMNTIQSAGNATANNTLYQGLKAKF 125
>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
Length = 1675
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 449 VPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAISTEKPFVPHDSY 580
+P SG A+P +PP S PF T P +P S+
Sbjct: 1492 IPRSGHAMPDIPPKSHNSPFAVQVTQFTIPRSGHAMPDIPPKSH 1535
>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +3
Query: 60 SPASPTARRSWCGEAPRSSATRGASPRTRGTR*ATSWEPTPPA 188
SPA T+ A R+S RG SP +RG R P PPA
Sbjct: 515 SPARITSPARASSPAGRASPARGVSPASRGKR------PAPPA 551
>SB_44967| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1284
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 482 PPPSSRDPFTGSGAYVTQAAISTEKPFVP 568
PPP++ TGSG + + + KP +P
Sbjct: 1205 PPPTTATAMTGSGFVLPSTPVVSSKPILP 1233
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 482 PPPSSRDPFTGSGAYVTQAAISTEKPFVP 568
PPP++ TGSG + + + KP +P
Sbjct: 579 PPPTTATAMTGSGFVLPSTPVVSSKPILP 607
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 129 ASPRTRGTR*ATSWEPTPPARGRPCTRGR-NTTSYLASTSKTEP 257
+SPRT T T W TPP + TR TT S S+T P
Sbjct: 922 SSPRTASTVETTPW-TTPPVKTTTGTRSSIETTPETTSPSETTP 964
>SB_49011| Best HMM Match : Gemini_mov (HMM E-Value=9)
Length = 149
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 23 KVSELPGPEVLLEPGKSDGQTKLVRRGAAVKCYS 124
K+S+ P + +PG+SDG + +G V+ YS
Sbjct: 60 KLSQAPCADEDQKPGRSDGNSNQAYQGMVVRSYS 93
>SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37)
Length = 1122
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 482 PPPSSRDPFTGSGAYVTQAAISTEKPFVP 568
PPP++ TGSG + + + KP +P
Sbjct: 1060 PPPTTATAMTGSGFVLPSTPVVSSKPILP 1088
>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
Length = 1774
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/55 (20%), Positives = 21/55 (38%)
Frame = +2
Query: 119 YSWSVAENTWNEIGDVMGANPASEGKTMYQGKEYDFVFSVDIKDGAPPIKLPYNK 283
Y ++ W ++ D +G + Y + YD + G + LPY +
Sbjct: 607 YEMVTSKRLWRQVYDALGGSTTITSAATYTRRHYDQAYRYRRPRGGARLLLPYER 661
>SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)
Length = 382
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 203 YQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWA 301
YQ F+F++ K+G P KLP +T D A
Sbjct: 280 YQSSSRSFLFTLCNKNGYRPEKLPLRRTPDEHA 312
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,325,633
Number of Sequences: 59808
Number of extensions: 378302
Number of successful extensions: 1352
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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