Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b16f
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66515-12|CAC42333.1| 860|Caenorhabditis elegans Hypothetical p... 85 5e-17
Z66515-11|CAA91354.1| 858|Caenorhabditis elegans Hypothetical p... 85 5e-17
Z48178-11|CAC42247.1| 860|Caenorhabditis elegans Hypothetical p... 85 5e-17
Z48178-10|CAA88206.1| 858|Caenorhabditis elegans Hypothetical p... 85 5e-17
U97005-4|AAB52283.1| 314|Caenorhabditis elegans Hypothetical pr... 30 1.2
U80029-12|AAB37591.1| 456|Caenorhabditis elegans Hypothetical p... 28 6.6
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 28 6.6
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 28 6.6
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo... 28 6.6
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 28 6.6
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 28 6.6
Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical p... 27 8.7
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 27 8.7
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 27 8.7
AF016427-3|AAB65356.1| 730|Caenorhabditis elegans Yeast mcm (li... 27 8.7
>Z66515-12|CAC42333.1| 860|Caenorhabditis elegans Hypothetical
protein C05C10.6b protein.
Length = 860
Score = 84.6 bits (200), Expect = 5e-17
Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Frame = +2
Query: 194 KTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWAAAQAFIHRNDLPQGYLEQVANFII 373
K + GKEYD+ V+ G P ++P+N E P AAQ F+ R+ LP + +A I
Sbjct: 425 KVIVDGKEYDYALGVNFGKGEPDKQMPFNVNESPQFAAQRFVERHQLPVSVIPSLAGMIS 484
Query: 374 TNA-KLDSLPASS-NGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAIS 547
KL AS+ +G+ DP TG RYVP G++ G DPFTGSG YV QA+ S
Sbjct: 485 QEMDKLSKGAASAQSGYEDPFTGPGRYVP-QGSSNSG---GHGADPFTGSGRYVPQASNS 540
Query: 548 T 550
+
Sbjct: 541 S 541
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = +2
Query: 173 ANPASEGKTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWAAAQAFIHRNDLPQGYLE 352
A ++ + M Q + VDI D + L Y K DP AQ F+ N+LP YLE
Sbjct: 343 AKLTAKTERMKQEEHETVTIKVDIDDRPTQLNLKYKKGTDPGLCAQEFLSENNLPIHYLE 402
Query: 353 QVANFI 370
++ FI
Sbjct: 403 EITRFI 408
>Z66515-11|CAA91354.1| 858|Caenorhabditis elegans Hypothetical
protein C05C10.6a protein.
Length = 858
Score = 84.6 bits (200), Expect = 5e-17
Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Frame = +2
Query: 194 KTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWAAAQAFIHRNDLPQGYLEQVANFII 373
K + GKEYD+ V+ G P ++P+N E P AAQ F+ R+ LP + +A I
Sbjct: 423 KVIVDGKEYDYALGVNFGKGEPDKQMPFNVNESPQFAAQRFVERHQLPVSVIPSLAGMIS 482
Query: 374 TNA-KLDSLPASS-NGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAIS 547
KL AS+ +G+ DP TG RYVP G++ G DPFTGSG YV QA+ S
Sbjct: 483 QEMDKLSKGAASAQSGYEDPFTGPGRYVP-QGSSNSG---GHGADPFTGSGRYVPQASNS 538
Query: 548 T 550
+
Sbjct: 539 S 539
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = +2
Query: 173 ANPASEGKTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWAAAQAFIHRNDLPQGYLE 352
A ++ + M Q + VDI D + L Y K DP AQ F+ N+LP YLE
Sbjct: 341 AKLTAKTERMKQEEHETVTIKVDIDDRPTQLNLKYKKGTDPGLCAQEFLSENNLPIHYLE 400
Query: 353 QVANFI 370
++ FI
Sbjct: 401 EITRFI 406
>Z48178-11|CAC42247.1| 860|Caenorhabditis elegans Hypothetical
protein C05C10.6b protein.
Length = 860
Score = 84.6 bits (200), Expect = 5e-17
Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Frame = +2
Query: 194 KTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWAAAQAFIHRNDLPQGYLEQVANFII 373
K + GKEYD+ V+ G P ++P+N E P AAQ F+ R+ LP + +A I
Sbjct: 425 KVIVDGKEYDYALGVNFGKGEPDKQMPFNVNESPQFAAQRFVERHQLPVSVIPSLAGMIS 484
Query: 374 TNA-KLDSLPASS-NGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAIS 547
KL AS+ +G+ DP TG RYVP G++ G DPFTGSG YV QA+ S
Sbjct: 485 QEMDKLSKGAASAQSGYEDPFTGPGRYVP-QGSSNSG---GHGADPFTGSGRYVPQASNS 540
Query: 548 T 550
+
Sbjct: 541 S 541
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = +2
Query: 173 ANPASEGKTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWAAAQAFIHRNDLPQGYLE 352
A ++ + M Q + VDI D + L Y K DP AQ F+ N+LP YLE
Sbjct: 343 AKLTAKTERMKQEEHETVTIKVDIDDRPTQLNLKYKKGTDPGLCAQEFLSENNLPIHYLE 402
Query: 353 QVANFI 370
++ FI
Sbjct: 403 EITRFI 408
>Z48178-10|CAA88206.1| 858|Caenorhabditis elegans Hypothetical
protein C05C10.6a protein.
Length = 858
Score = 84.6 bits (200), Expect = 5e-17
Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Frame = +2
Query: 194 KTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWAAAQAFIHRNDLPQGYLEQVANFII 373
K + GKEYD+ V+ G P ++P+N E P AAQ F+ R+ LP + +A I
Sbjct: 423 KVIVDGKEYDYALGVNFGKGEPDKQMPFNVNESPQFAAQRFVERHQLPVSVIPSLAGMIS 482
Query: 374 TNA-KLDSLPASS-NGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAIS 547
KL AS+ +G+ DP TG RYVP G++ G DPFTGSG YV QA+ S
Sbjct: 483 QEMDKLSKGAASAQSGYEDPFTGPGRYVP-QGSSNSG---GHGADPFTGSGRYVPQASNS 538
Query: 548 T 550
+
Sbjct: 539 S 539
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = +2
Query: 173 ANPASEGKTMYQGKEYDFVFSVDIKDGAPPIKLPYNKTEDPWAAAQAFIHRNDLPQGYLE 352
A ++ + M Q + VDI D + L Y K DP AQ F+ N+LP YLE
Sbjct: 341 AKLTAKTERMKQEEHETVTIKVDIDDRPTQLNLKYKKGTDPGLCAQEFLSENNLPIHYLE 400
Query: 353 QVANFI 370
++ FI
Sbjct: 401 EITRFI 406
>U97005-4|AAB52283.1| 314|Caenorhabditis elegans Hypothetical
protein F19F10.5 protein.
Length = 314
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 374 TNAKLDSLPASSNGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAISTE 553
+N L S P+SS+ + T + P S + PP DPF A++TQ ++T+
Sbjct: 228 SNFSLQSSPSSSSNSSSARTMSATSSPTSSLE-DVINPPVLIDPFQMQMAHITQTFLATQ 286
Query: 554 KP 559
P
Sbjct: 287 LP 288
>U80029-12|AAB37591.1| 456|Caenorhabditis elegans Hypothetical
protein T20D4.6 protein.
Length = 456
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 449 VPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAISTEKPFVP 568
V +P PPPS ++ G G V A +P+VP
Sbjct: 400 VQDGNAVIPSAPPPSYQESMYGKGGTVLDA--KENEPYVP 437
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = -3
Query: 489 GGGRPGTAVPEPGTYRDSPVRGSAKPLLEAGSESNFAFVIMKLATCSKYPCGRSFLWMKA 310
GGG G A +Y SPVR +A +E G +FV+ ++ S R +
Sbjct: 1238 GGGAVGAAPVIKSSYGSSPVRIAAASAIERGE----SFVVEPVSGSSASATDRRGRSTSS 1293
Query: 309 CAAAQGSS 286
A A GSS
Sbjct: 1294 GAVASGSS 1301
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 410 NGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAAISTEKPFVPHDSY 580
+G A+ L+G S +P P P P+ + +G+G +Q A + P V H +Y
Sbjct: 1383 SGSAEQLSGMSPAIPDQ--VKPATPQPTEAELQSGTGGGGSQGAEAQVVPNVTHFAY 1437
>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform c protein.
Length = 1340
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = -3
Query: 489 GGGRPGTAVPEPGTYRDSPVRGSAKPLLEAGSESNFAFVIMKLATCSKYPCGRSFLWMKA 310
GGG G A +Y SPVR +A +E G +FV+ ++ S R +
Sbjct: 1199 GGGAVGAAPVIKSSYGSSPVRIAAASAIERGE----SFVVEPVSGSSASATDRRGRSTSS 1254
Query: 309 CAAAQGSS 286
A A GSS
Sbjct: 1255 GAVASGSS 1262
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = -3
Query: 489 GGGRPGTAVPEPGTYRDSPVRGSAKPLLEAGSESNFAFVIMKLATCSKYPCGRSFLWMKA 310
GGG G A +Y SPVR +A +E G +FV+ ++ S R +
Sbjct: 1235 GGGAVGAAPVIKSSYGSSPVRIAAASAIERGE----SFVVEPVSGSSASATDRRGRSTSS 1290
Query: 309 CAAAQGSS 286
A A GSS
Sbjct: 1291 GAVASGSS 1298
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = -3
Query: 489 GGGRPGTAVPEPGTYRDSPVRGSAKPLLEAGSESNFAFVIMKLATCSKYPCGRSFLWMKA 310
GGG G A +Y SPVR +A +E G +FV+ ++ S R +
Sbjct: 1238 GGGAVGAAPVIKSSYGSSPVRIAAASAIERGE----SFVVEPVSGSSASATDRRGRSTSS 1293
Query: 309 CAAAQGSS 286
A A GSS
Sbjct: 1294 GAVASGSS 1301
>Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical
protein K08E3.8 protein.
Length = 441
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 398 PASSNGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQA-AISTEKPFVPHD 574
P S + S + PGS A PP+S P + + T A A S+++P P++
Sbjct: 230 PPGSTQAPSSVQPASTFNPGSIQAPASQQPPASVQPPPSAASGSTVAGAQSSKEPLKPNE 289
Query: 575 SYIRFDQ 595
IR Q
Sbjct: 290 EQIRMVQ 296
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +2
Query: 401 ASSNGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAA 541
+ G A G S Y G G P PPP+ T SGA AA
Sbjct: 598 SGGGGDAGSAAGGSNY-SGGGETAPAAPPPAPEPAQTYSGAGGESAA 643
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +2
Query: 401 ASSNGFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTGSGAYVTQAA 541
+ G A G S Y G G P PPP+ T SGA AA
Sbjct: 598 SGGGGDAGSAAGGSNY-SGGGETAPAAPPPAPEPAQTYSGAGGESAA 643
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -3
Query: 504 GSRDEGGGRPGTAVPEPGTYRDSPVRGSAKP 412
G R GGGR G G RDS +R SA P
Sbjct: 76 GQRRGGGGRGGGFGGRGGGGRDSGLRSSASP 106
>AF016427-3|AAB65356.1| 730|Caenorhabditis elegans Yeast mcm
(licensing factor) relatedprotein 7 protein.
Length = 730
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 413 GFADPLTGESRYVPGSGTAVPGLPPPSSRDPFTG 514
G+ + L S+Y G G++ GL +DP TG
Sbjct: 401 GYVNRLAPRSQYTTGRGSSGVGLTAAVMKDPVTG 434
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,279,409
Number of Sequences: 27780
Number of extensions: 273939
Number of successful extensions: 1052
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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