Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b16f
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.4  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   4.5  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   4.5  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   4.5  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   4.5  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   4.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.5  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   5.9  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   5.9  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   5.9  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   5.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   5.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   5.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   5.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   5.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 446 YVPGSGTAVPGLPP 487
           Y+PG+G  +P  PP
Sbjct: 419 YLPGNGVIIPDDPP 432



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 110 VKCYSWSVAENTWNEIGDVMGANPASE 190
           +K  +W +  NTW  I +++  +   E
Sbjct: 263 IKWKNWDLKYNTWEPISNLINCSDILE 289


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 382 RIRYYEVGYLLQVPL 338
           +++YY + Y+ Q+P+
Sbjct: 109 KLQYYNINYIEQIPI 123


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 382 RIRYYEVGYLLQVPL 338
           +++YY + Y+ Q+P+
Sbjct: 109 KLQYYNINYIEQIPI 123


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 382 RIRYYEVGYLLQVPL 338
           +++YY + Y+ Q+P+
Sbjct: 109 KLQYYNINYIEQIPI 123


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 382 RIRYYEVGYLLQVPL 338
           +++YY + Y+ Q+P+
Sbjct: 109 KLQYYNINYIEQIPI 123


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 382 RIRYYEVGYLLQVPLRQVISV 320
           +++YY + Y+ Q+P+   I V
Sbjct: 99  KLQYYNINYIEQIPVPVPIPV 119


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 410 NGFADPLTGESRYVPGSGTAVPGLPPPSS 496
           N  A  +T  S   PG G++ P    PSS
Sbjct: 70  NDSAAAITSTSPSYPGGGSSSPSPSSPSS 98


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 382 RIRYYEVGYLLQVPL 338
           +++YY + Y+ Q+P+
Sbjct: 99  KLQYYNINYIEQIPV 113


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 382 RIRYYEVGYLLQVPL 338
           +++YY + Y+ Q+P+
Sbjct: 99  KLQYYNINYIEQIPV 113


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 382 RIRYYEVGYLLQVPL 338
           +++YY + Y+ Q+P+
Sbjct: 99  KLQYYNINYIEQIPV 113


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 382 RIRYYEVGYLLQVPL 338
           +++YY + Y+ Q+P+
Sbjct: 320 KLQYYNINYIEQIPV 334


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 382 RIRYYEVGYLLQVPL 338
           +++YY + Y+ Q+P+
Sbjct: 331 KLQYYNINYIEQIPV 345


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 382 RIRYYEVGYLLQVPL 338
           +++YY + Y+ Q+P+
Sbjct: 331 KLQYYNINYIEQIPV 345


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 382 RIRYYEVGYLLQVPL 338
           +++YY + Y+ Q+P+
Sbjct: 320 KLQYYNINYIEQIPV 334


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -2

Query: 382 RIRYYEVGYLLQVPL 338
           +++YY + Y+ Q+P+
Sbjct: 332 KLQYYNINYIEQIPV 346


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 314 FIHRNDLPQGYLEQVANFIITNAKLDSLPASSNGF 418
           F+H+  + + +LE+++N +   A+ D     ++GF
Sbjct: 263 FLHKQLMTRYFLERMSNDLGKTAEFDWNKPINSGF 297



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 249 SLMSTLNTKSYSFPWY 202
           S M   NTKSY  P Y
Sbjct: 625 SSMDESNTKSYEIPLY 640


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 314 FIHRNDLPQGYLEQVANFIITNAKLDSLPASSNGF 418
           F+H+  + + +LE+++N +   A+ D     ++GF
Sbjct: 263 FLHKQLMTRYFLERMSNDLGKTAEFDWNKPINSGF 297



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 249 SLMSTLNTKSYSFPWY 202
           S M   NTKSY  P Y
Sbjct: 625 SSMDESNTKSYEIPLY 640


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 385 FRIRYYEVGYLLQVPL 338
           +R  YY + Y+ Q+P+
Sbjct: 104 YRKLYYNINYIEQIPI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,726
Number of Sequences: 438
Number of extensions: 3487
Number of successful extensions: 22
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)