Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b15r
(737 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p... 140 4e-32
UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm... 132 9e-30
UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homol... 105 1e-21
UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like pr... 101 1e-20
UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1; Filobas... 82 2e-14
UniRef50_A7APW1 Cluster: LSM domain containing protein; n=1; Bab... 77 3e-13
UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1; ... 77 5e-13
UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm... 75 2e-12
UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albica... 71 2e-11
UniRef50_A0DH27 Cluster: Chromosome undetermined scaffold_50, wh... 71 3e-11
UniRef50_Q7S1Q3 Cluster: Putative uncharacterized protein NCU095... 69 2e-10
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 66 6e-10
UniRef50_Q4N631 Cluster: Sm protein, putative; n=1; Theileria pa... 63 8e-09
UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 59 1e-07
UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1; Plasm... 57 4e-07
UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1... 52 1e-05
UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2; C... 48 2e-04
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 48 2e-04
UniRef50_Q2H770 Cluster: Predicted protein; n=1; Chaetomium glob... 47 4e-04
UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11; E... 44 0.003
UniRef50_A7Q0D5 Cluster: Chromosome chr7 scaffold_42, whole geno... 44 0.004
UniRef50_Q9FI15 Cluster: Similarity to small nuclear ribonucleop... 44 0.005
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A... 44 0.005
UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subuni... 43 0.007
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 42 0.016
UniRef50_Q01DG8 Cluster: Small nuclear ribonucleoprotein D2-like... 41 0.028
UniRef50_Q9VI10 Cluster: Probable small nuclear ribonucleoprotei... 41 0.028
UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein, ... 41 0.036
UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 41 0.036
UniRef50_Q9HPS2 Cluster: SnRNP homolog; n=2; Halobacteriaceae|Re... 40 0.048
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 40 0.048
UniRef50_P62316 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 40 0.048
UniRef50_Q5V3W7 Cluster: SnRNP-like protein; n=2; Halobacteriace... 40 0.064
UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putati... 40 0.084
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 40 0.084
UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella... 39 0.11
UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2; T... 39 0.11
UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2; ... 39 0.15
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 38 0.19
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M... 38 0.19
UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein, puta... 38 0.26
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 38 0.26
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 38 0.26
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 38 0.34
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 38 0.34
UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein... 37 0.45
UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm... 37 0.45
UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 37 0.59
UniRef50_O42978 Cluster: U6 snRNP-associated protein Lsm5; n=4; ... 37 0.59
UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein ... 36 0.78
UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E hom... 36 0.78
UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole ge... 36 0.78
UniRef50_A7D237 Cluster: Like-Sm ribonucleoprotein, core; n=1; H... 36 0.78
UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lambl... 35 1.8
UniRef50_Q55A45 Cluster: Putative small nuclear ribonucleopartic... 35 1.8
UniRef50_Q4Q3L7 Cluster: Small nuclear ribonucleoprotein SmD2; n... 35 1.8
UniRef50_A2FZR2 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 35 1.8
UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, wh... 35 1.8
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 35 1.8
UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative; ... 35 2.4
UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 35 2.4
UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein NCU019... 35 2.4
UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa g... 35 2.4
UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein, pu... 34 3.2
UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2; ... 34 3.2
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 33 5.5
UniRef50_Q8SQH7 Cluster: Probable U6 snRNA-associated Sm-like pr... 33 5.5
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 33 7.3
UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1; T... 33 7.3
UniRef50_Q4PA95 Cluster: Putative uncharacterized protein; n=1; ... 33 9.7
>UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p -
Drosophila melanogaster (Fruit fly)
Length = 103
Score = 140 bits (338), Expect = 4e-32
Identities = 69/102 (67%), Positives = 80/102 (78%), Gaps = 2/102 (1%)
Frame = -2
Query: 625 MADDTENVA--VMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXX 452
MAD+TE ++ ++ VKEPLDLIRLSLDE++YVKMRNERELRG+LHA+DQHLNMVLGDA
Sbjct: 1 MADETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEE 60
Query: 451 XXXXXXXXXXXXXXXYRTTKRTIPMLFVRGDGVILVSPPVRV 326
Y+T KRTIPMLFVRGDGVILVSPP+RV
Sbjct: 61 TVTTVEIDEETYEEVYKTAKRTIPMLFVRGDGVILVSPPMRV 102
>UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=39; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm3 - Homo sapiens (Human)
Length = 102
Score = 132 bits (319), Expect = 9e-30
Identities = 65/101 (64%), Positives = 75/101 (74%), Gaps = 1/101 (0%)
Frame = -2
Query: 625 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXX 449
MADD + TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHLNM+LGD
Sbjct: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
Query: 448 XXXXXXXXXXXXXXYRTTKRTIPMLFVRGDGVILVSPPVRV 326
Y++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 61 VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV 101
>UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homolog,
U6 small nuclear RNA associated; n=3; Homo/Pan/Gorilla
group|Rep: PREDICTED: similar to LSM3 homolog, U6 small
nuclear RNA associated - Homo sapiens
Length = 101
Score = 105 bits (252), Expect = 1e-21
Identities = 53/101 (52%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Frame = -2
Query: 625 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXX 449
MAD+ + TV++PLDL RLS +ERI VKMRN+RELRG+LH YDQHLNM+LGD
Sbjct: 1 MADNVDQQQTTNTVEDPLDL-RLSPEERICVKMRNDRELRGRLHTYDQHLNMILGDVEET 59
Query: 448 XXXXXXXXXXXXXXYRTTKRTIPMLFVRGDGVILVSPPVRV 326
Y +TK+ IP+ F+RGDG+ LV+PP+RV
Sbjct: 60 VTTIEIDEETYEETYESTKQNIPVFFLRGDGIFLVAPPLRV 100
>UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm3; n=8; Ascomycota|Rep: Probable U6
snRNA-associated Sm-like protein LSm3 -
Schizosaccharomyces pombe (Fission yeast)
Length = 93
Score = 101 bits (243), Expect = 1e-20
Identities = 47/89 (52%), Positives = 59/89 (66%)
Frame = -2
Query: 601 AVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXX 422
+ V EPLDL+RLSLDE +YVK+R +REL G+LHAYD+HLNMVLGDA
Sbjct: 3 SAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEET 62
Query: 421 XXXXXYRTTKRTIPMLFVRGDGVILVSPP 335
+T ++ MLFVRGD VIL++PP
Sbjct: 63 DKDKALKTIRKHYEMLFVRGDSVILIAPP 91
>UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1;
Filobasidiella neoformans|Rep: Sm-like protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 95
Score = 81.8 bits (193), Expect = 2e-14
Identities = 38/84 (45%), Positives = 53/84 (63%)
Frame = -2
Query: 589 VKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXX 410
++EPLDL++L+L ER+ +K+R +R + G LHAYD H+N+V+ A
Sbjct: 9 IQEPLDLVKLALGERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQPL 68
Query: 409 XYRTTKRTIPMLFVRGDGVILVSP 338
R +RT MLFVRGDGVIL+SP
Sbjct: 69 PPRIERRTAEMLFVRGDGVILLSP 92
>UniRef50_A7APW1 Cluster: LSM domain containing protein; n=1;
Babesia bovis|Rep: LSM domain containing protein -
Babesia bovis
Length = 89
Score = 77.4 bits (182), Expect = 3e-13
Identities = 35/82 (42%), Positives = 51/82 (62%)
Frame = -2
Query: 586 KEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 407
KEP+D+IR++LDER+Y+K + RE+ G+LHAYD+H NM+L DA
Sbjct: 3 KEPMDVIRVNLDERVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTNQEV 62
Query: 406 YRTTKRTIPMLFVRGDGVILVS 341
T + ++FVRGD +IL+S
Sbjct: 63 TTITSKDSGVVFVRGDALILLS 84
>UniRef50_Q0UCR7 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 134
Score = 77.0 bits (181), Expect = 5e-13
Identities = 36/74 (48%), Positives = 45/74 (60%)
Frame = -2
Query: 583 EPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXY 404
EPLDL+RL +DE + VK+R +REL+G+LHAYD H N+VLGD
Sbjct: 9 EPLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVAEEEEEDQEPRV 68
Query: 403 RTTKRTIPMLFVRG 362
RT K+ MLFVRG
Sbjct: 69 RTVKKQSEMLFVRG 82
>UniRef50_A5K5Q0 Cluster: U6 snRNA-associated Sm-like protein LSm3,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm3, putative - Plasmodium vivax
Length = 91
Score = 74.5 bits (175), Expect = 2e-12
Identities = 34/86 (39%), Positives = 53/86 (61%)
Frame = -2
Query: 598 VMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXX 419
+ ++ PLD IRL+++E +++K + +RE+RGKL AYD HLNM+L +A
Sbjct: 4 IALIQNPLDYIRLNMEEEVFLKCKGDREIRGKLDAYDNHLNMILSNA--HETYKQSVVEN 61
Query: 418 XXXXYRTTKRTIPMLFVRGDGVILVS 341
+ +R + M+FVRGD +ILVS
Sbjct: 62 DEESVKKIERNLDMVFVRGDSIILVS 87
>UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albicans
CaSMX4 U6 snRNA-associated Sm-like protein; n=2;
Saccharomycetaceae|Rep: Similar to CA3420|CaSMX4 Candida
albicans CaSMX4 U6 snRNA-associated Sm-like protein -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 88
Score = 71.3 bits (167), Expect = 2e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = -2
Query: 586 KEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 407
+EPLDL+R LDE + VK+R RE++GKL YD H NM+L DA
Sbjct: 11 QEPLDLVRYQLDELVLVKLRGAREMKGKLQGYDSHCNMILSDA------VEYIYDVPEGQ 64
Query: 406 YRTTKRTIPMLFVRGDGVILVSP 338
TK T M+FVRGD VIL+SP
Sbjct: 65 EPVTKNT-DMVFVRGDSVILISP 86
>UniRef50_A0DH27 Cluster: Chromosome undetermined scaffold_50, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_50,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 85
Score = 70.9 bits (166), Expect = 3e-11
Identities = 35/85 (41%), Positives = 52/85 (61%)
Frame = -2
Query: 592 TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXX 413
T+ EPLD+++ S+ ++IY+KMRN EL+G L +YD HLNM++ A
Sbjct: 3 TLDEPLDVLKFSIAQQIYIKMRNNIELKGTLVSYDNHLNMIISKAEETSFQEGI------ 56
Query: 412 XXYRTTKRTIPMLFVRGDGVILVSP 338
TKR + L++RGDG+IL+SP
Sbjct: 57 ----KTKRKLDALYLRGDGIILISP 77
>UniRef50_Q7S1Q3 Cluster: Putative uncharacterized protein
NCU09512.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU09512.1 - Neurospora crassa
Length = 168
Score = 68.5 bits (160), Expect = 2e-10
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = -2
Query: 625 MADDTENVAVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
MAD E+ +V EP+DL+RL LDE + VK+R +REL+G+LHAYD H N+VLG+
Sbjct: 1 MADAVEDAG--SVSEPMDLVRLLLDEVVCVKLRGDRELKGRLHAYDSHCNLVLGE 53
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 66.5 bits (155), Expect = 6e-10
Identities = 34/85 (40%), Positives = 49/85 (57%)
Frame = -2
Query: 589 VKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXX 410
++ PLDL++L+LDER+Y+K+R R L G L A+D H N+VL DA
Sbjct: 1 METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELS--- 57
Query: 409 XYRTTKRTIPMLFVRGDGVILVSPP 335
++R M+F+RGD V L+S P
Sbjct: 58 ---ESERRCEMVFIRGDTVTLISTP 79
>UniRef50_Q4N631 Cluster: Sm protein, putative; n=1; Theileria
parva|Rep: Sm protein, putative - Theileria parva
Length = 84
Score = 62.9 bits (146), Expect = 8e-09
Identities = 27/45 (60%), Positives = 38/45 (84%)
Frame = -2
Query: 595 MTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
+T++EPLD+IRL+LDE IY+K +N REL G+L A+D+H NMVL +
Sbjct: 5 VTLQEPLDMIRLNLDEVIYLKCKNGRELVGRLQAFDEHCNMVLSE 49
>UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 84
Score = 59.3 bits (137), Expect = 1e-07
Identities = 30/80 (37%), Positives = 45/80 (56%)
Frame = -2
Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYR 401
P D IRLS+++R+ VK++ +EL G LHAYD+H N++LGD
Sbjct: 7 PQDYIRLSMEKRVKVKVQEGQELEGVLHAYDEHYNIILGDV----LESIMGLDKNGKFIP 62
Query: 400 TTKRTIPMLFVRGDGVILVS 341
+ I MLFVRGD ++ ++
Sbjct: 63 VRQNQIDMLFVRGDRIVSIA 82
>UniRef50_Q8IB34 Cluster: Ribonucleoprotein, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 74
Score = 57.2 bits (132), Expect = 4e-07
Identities = 28/76 (36%), Positives = 43/76 (56%)
Frame = -2
Query: 556 LDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYRTTKRTIPM 377
++E I++K + +REL GKL AYD HLNM+L + + +R + M
Sbjct: 1 MEEEIFLKCKGDRELIGKLDAYDNHLNMILSNV--RETYKYSVKENDEETVKKMERNLDM 58
Query: 376 LFVRGDGVILVSPPVR 329
+FVRGD +ILVS ++
Sbjct: 59 VFVRGDSIILVSSAMK 74
>UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN D2 - Encephalitozoon cuniculi
Length = 135
Score = 52.4 bits (120), Expect = 1e-05
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Frame = -2
Query: 619 DDTENVAVMTVKEPLDLIRLSLDER--IYVKMRNERELRGKLHAYDQHLNMVLGDAXXXX 446
DD M +K PL L+R ++ + + V +R+ R++ G++ AYD+H N+++ DA
Sbjct: 8 DDPNEKETMEMKGPLSLVRRAMVKMKPVLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELG 67
Query: 445 XXXXXXXXXXXXXYRTTKRTIPMLFVRGDGVILVSPPVRV 326
R + +F+RGD VILV+ + V
Sbjct: 68 TTRGKNKGRKKRQGCEFSRKLGKVFIRGDTVILVAGEIEV 107
>UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2;
Cryptosporidium|Rep: Small nuclear ribonucleoprotein -
Cryptosporidium parvum Iowa II
Length = 106
Score = 48.0 bits (109), Expect = 2e-04
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -2
Query: 580 PLDLIR--LSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 407
PL L+ + + +I V RN R++ G++ A+D+H N++L DA
Sbjct: 21 PLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGKKGSAK 80
Query: 406 YRTTKRTIPMLFVRGDGVILV 344
Y R I LFVRGD VIL+
Sbjct: 81 YINKDRFISKLFVRGDSVILI 101
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/86 (30%), Positives = 46/86 (53%)
Frame = -2
Query: 595 MTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXX 416
+ V+ PLD + SL+ + +K++ +RE RG L ++D H+N+VL DA
Sbjct: 9 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDA------------EE 56
Query: 415 XXXYRTTKRTIPMLFVRGDGVILVSP 338
T+R + + +RGD ++ +SP
Sbjct: 57 LEDGEVTRR-LGTVLIRGDNIVYISP 81
>UniRef50_Q2H770 Cluster: Predicted protein; n=1; Chaetomium
globosum|Rep: Predicted protein - Chaetomium globosum
(Soil fungus)
Length = 117
Score = 47.2 bits (107), Expect = 4e-04
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = -2
Query: 589 VKEPLDLIRLSLDERIYVKMRNERELRGKLH 497
V EPLDL+RL LDE + VK+R +REL+G+LH
Sbjct: 11 VSEPLDLVRLLLDEVVCVKLRGDRELKGRLH 41
>UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Pyrococcus furiosus
Length = 76
Score = 44.4 bits (100), Expect = 0.003
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = -2
Query: 586 KEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDA 458
+ PLD+I SLD+ + V ++ E RGKL YD HLN+VL +A
Sbjct: 3 ERPLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANA 45
>UniRef50_A7Q0D5 Cluster: Chromosome chr7 scaffold_42, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr7 scaffold_42, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 170
Score = 44.0 bits (99), Expect = 0.004
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Frame = -2
Query: 631 LEMADDT--ENVAVMTVKEPLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLG 464
L+M DD +N PL ++ +S+ + ++ + RN ++L G++ A+D+H NMVL
Sbjct: 65 LQMEDDATAKNEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 124
Query: 463 DAXXXXXXXXXXXXXXXXXYRTTK-RTIPMLFVRGDGVILV 344
+ K R I +F+RGD VI+V
Sbjct: 125 NVREMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIV 165
>UniRef50_Q9FI15 Cluster: Similarity to small nuclear
ribonucleoprotein; n=6; Viridiplantae|Rep: Similarity to
small nuclear ribonucleoprotein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 254
Score = 43.6 bits (98), Expect = 0.005
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = -2
Query: 556 LDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYRTTKRTIPM 377
++ R+ V +++ R+L GK A+D+H+N+VLGD R +RT+ +
Sbjct: 13 INYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTLGL 72
Query: 376 LFVRGDGVI 350
+ +RG+ VI
Sbjct: 73 VLLRGEEVI 81
>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
Archaea|Rep: Putative snRNP Sm-like protein -
Archaeoglobus fulgidus
Length = 77
Score = 43.6 bits (98), Expect = 0.005
Identities = 27/81 (33%), Positives = 39/81 (48%)
Frame = -2
Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYR 401
PLD++ SL + V+++ RE RG L YD H+N+VL DA
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVV---------- 54
Query: 400 TTKRTIPMLFVRGDGVILVSP 338
R + + +RGD V+ VSP
Sbjct: 55 ---RKVGSVVIRGDTVVFVSP 72
>UniRef50_Q59ZT4 Cluster: Potential RNA processing complex subunit
Lsm5; n=2; Saccharomycetales|Rep: Potential RNA
processing complex subunit Lsm5 - Candida albicans
(Yeast)
Length = 119
Score = 43.2 bits (97), Expect = 0.007
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = -2
Query: 673 YFNKT*NKLFS*QYLEMADDTENVAVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHA 494
+F +T K FS M+D+T V+ PL++I S+ +R+ V M ++E GKL
Sbjct: 27 FFVETKKKPFSFLSTIMSDETVPQTVL----PLEVIDRSVGKRVRVLMTGDKEFNGKLIG 82
Query: 493 YDQHLNMVLGD 461
+D ++NMVL D
Sbjct: 83 FDDYVNMVLED 93
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 41.9 bits (94), Expect = 0.016
Identities = 23/73 (31%), Positives = 39/73 (53%)
Frame = -2
Query: 556 LDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYRTTKRTIPM 377
+D + VK+++ ++G L YDQHLN++LGDA T+ R + +
Sbjct: 17 VDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDA--------------EEIGETSIRRLGL 62
Query: 376 LFVRGDGVILVSP 338
VRGD V++++P
Sbjct: 63 TLVRGDSVVVITP 75
>UniRef50_Q01DG8 Cluster: Small nuclear ribonucleoprotein D2-like
protein; n=5; Eukaryota|Rep: Small nuclear
ribonucleoprotein D2-like protein - Ostreococcus tauri
Length = 103
Score = 41.1 bits (92), Expect = 0.028
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = -2
Query: 580 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 407
PL ++ S+ + ++ + RN R+L ++ A+D+H NMVL +
Sbjct: 17 PLSVLTASVKANTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEIWTEVPKTGKGSAKA 76
Query: 406 YRTTK-RTIPMLFVRGDGVILV 344
K R + +F+RGD VILV
Sbjct: 77 KPVNKDRFVSKMFLRGDSVILV 98
>UniRef50_Q9VI10 Cluster: Probable small nuclear ribonucleoprotein
Sm D2; n=32; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein Sm D2 - Drosophila melanogaster (Fruit
fly)
Length = 119
Score = 41.1 bits (92), Expect = 0.028
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = -2
Query: 580 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 407
PL ++ S+ + ++ + RN ++L G++ A+D+H NMVL +
Sbjct: 27 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 86
Query: 406 YRTTK-RTIPMLFVRGDGVILV 344
K R I +F+RGD VILV
Sbjct: 87 KPVNKDRFISKMFLRGDSVILV 108
>UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein,
putative; n=3; Piroplasmida|Rep: (U6) snRNA-associated
Sm-like protein, putative - Theileria annulata
Length = 90
Score = 40.7 bits (91), Expect = 0.036
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -2
Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
PL LI L +I++ M+N++E+ G L +D ++NMVL D
Sbjct: 12 PLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLED 51
>UniRef50_A4FX23 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanococcus|Rep: Like-Sm ribonucleoprotein, core -
Methanococcus maripaludis
Length = 72
Score = 40.7 bits (91), Expect = 0.036
Identities = 25/86 (29%), Positives = 44/86 (51%)
Frame = -2
Query: 598 VMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXX 419
+M + PLD + S++ + V +++ + ++G+L AYD H+N+ L +A
Sbjct: 1 MMDTQRPLDALGKSINTNVTVFLKDGKVVKGRLKAYDLHMNVALENA------------- 47
Query: 418 XXXXYRTTKRTIPMLFVRGDGVILVS 341
++ PML VRGD V+ VS
Sbjct: 48 --KIENDEEKEFPMLVVRGDNVLYVS 71
>UniRef50_Q9HPS2 Cluster: SnRNP homolog; n=2; Halobacteriaceae|Rep:
SnRNP homolog - Halobacterium salinarium (Halobacterium
halobium)
Length = 69
Score = 40.3 bits (90), Expect = 0.048
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = -2
Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVL 467
PLD++ SL+E + V++++ E G L YDQH+N+V+
Sbjct: 14 PLDVLEESLEETVTVRLKDGDEFTGVLTGYDQHMNVVI 51
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 40.3 bits (90), Expect = 0.048
Identities = 15/34 (44%), Positives = 27/34 (79%)
Frame = -2
Query: 559 SLDERIYVKMRNERELRGKLHAYDQHLNMVLGDA 458
S+ +++ VK+R+ E+RG L ++DQH+N++L DA
Sbjct: 19 SIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDA 52
>UniRef50_P62316 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=31; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D2 - Homo sapiens (Human)
Length = 118
Score = 40.3 bits (90), Expect = 0.048
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = -2
Query: 580 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 407
PL ++ S+ + ++ + RN ++L G++ A+D+H NMVL +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 406 YRTTK-RTIPMLFVRGDGVILV 344
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>UniRef50_Q5V3W7 Cluster: SnRNP-like protein; n=2;
Halobacteriaceae|Rep: SnRNP-like protein - Haloarcula
marismortui (Halobacterium marismortui)
Length = 60
Score = 39.9 bits (89), Expect = 0.064
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = -2
Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
PLD++ SL E + V+++ G+L YDQH+N+V+ D
Sbjct: 5 PLDVLEASLGETVTVQLKGGELFEGELTGYDQHMNLVVED 44
>UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Babesia bovis|Rep: Small nuclear ribonucleoprotein,
putative - Babesia bovis
Length = 162
Score = 39.5 bits (88), Expect = 0.084
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = -2
Query: 553 DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYRTTKRTIPML 374
+ ++ + R+ R+L G++ A+D+H NM+L D + R I L
Sbjct: 90 NSQVLINCRSNRKLLGRVKAFDRHFNMILTDVREMWTEVSGGGGKKKYMNK--DRYISRL 147
Query: 373 FVRGDGVILV 344
F+RGD V++V
Sbjct: 148 FLRGDSVVVV 157
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 39.5 bits (88), Expect = 0.084
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = -2
Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
P D +R LD+ + V+++ + LRG+L ++D HLN+VL D
Sbjct: 3 PHDCLRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDD 42
>UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 101
Score = 39.1 bits (87), Expect = 0.11
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = -2
Query: 625 MADDTENVA-VMTVKEPLDLIR--LSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAX 455
M +T +V V+ K P L+ L+ +I + + + G + +D+H N++L D
Sbjct: 1 MQKETHSVDNVLKNKGPFMLLSKVTKLNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVT 60
Query: 454 XXXXXXXXXXXXXXXXYRTTKRTIPMLFVRGDGVILVS 341
++ IP LF RGD VIL++
Sbjct: 61 EIWKEETTDARSLKKKVVIKEKFIPKLFFRGDAVILIT 98
>UniRef50_A0RYZ2 Cluster: Small nuclear ribonucleoprotein; n=2;
Thermoprotei|Rep: Small nuclear ribonucleoprotein -
Cenarchaeum symbiosum
Length = 106
Score = 39.1 bits (87), Expect = 0.11
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = -2
Query: 604 VAVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDA 458
V+ K PL ++ S + + V+++NE E +GK+ D ++N+++ DA
Sbjct: 27 VSQSNAKRPLTALQKSTKKAVTVRLKNETEYKGKMENVDSYMNLIMTDA 75
>UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2;
n=1; Guillardia theta|Rep: Small nuclear
ribonucleoprotein SM D2 - Guillardia theta (Cryptomonas
phi)
Length = 82
Score = 38.7 bits (86), Expect = 0.15
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = -2
Query: 553 DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYRTTKRTIPML 374
D+ + + +RN + + GK+ YD+HLN++L + + + IP +
Sbjct: 14 DKSVMIILRNNKRMIGKIINYDKHLNLLLENV----NEIKFVGENFSELIKIKSKFIPKV 69
Query: 373 FVRGDGVILV 344
F+RGD ++L+
Sbjct: 70 FLRGDNIVLI 79
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 38.3 bits (85), Expect = 0.19
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = -2
Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVL 467
PL++I S+ +I V M N++E +G L +D ++NMVL
Sbjct: 23 PLEIIDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVL 60
>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 80
Score = 38.3 bits (85), Expect = 0.19
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = -2
Query: 586 KEPLDLIRLSLDER-IYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXX 410
K P+D++ L+ + + + ++ RE++G L YD H+N+VL A
Sbjct: 8 KRPMDILDQVLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKA--------------EE 53
Query: 409 XYRTTKRTIPMLFVRGDGVILVSP 338
+ ++I L +RGD VI +SP
Sbjct: 54 IVQGQAQSIGTLIIRGDNVIYISP 77
>UniRef50_Q8IL38 Cluster: Small nuclear ribonuclear protein,
putative; n=3; Plasmodium|Rep: Small nuclear ribonuclear
protein, putative - Plasmodium falciparum (isolate 3D7)
Length = 101
Score = 37.9 bits (84), Expect = 0.26
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = -2
Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
PL L+ + +I++ M+ ++E+ GKL +D+++NMVL D
Sbjct: 12 PLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLED 51
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 37.9 bits (84), Expect = 0.26
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = -2
Query: 556 LDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYRTTKRTIPM 377
+D R+ + + + R L G A+D+HLN++L + TKRT+ M
Sbjct: 11 IDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYRIRKQGIHEI------ETKRTLGM 64
Query: 376 LFVRGDGVILVS 341
+ VRGD +I +S
Sbjct: 65 IIVRGDNIISLS 76
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 37.9 bits (84), Expect = 0.26
Identities = 20/87 (22%), Positives = 44/87 (50%)
Frame = -2
Query: 595 MTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXX 416
M+V + ++ S+++ + +K++ + +RG L +DQH+N++L +
Sbjct: 1 MSVDMAVKVLDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGEA----- 55
Query: 415 XXXYRTTKRTIPMLFVRGDGVILVSPP 335
+ + + VRGD V+++SPP
Sbjct: 56 --------KGLGSIVVRGDNVVMISPP 74
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 37.5 bits (83), Expect = 0.34
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = -2
Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
P+ L+ S+++R+ + +++ R L G L YD ++NMVL D
Sbjct: 4 PMKLLEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDD 43
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 37.5 bits (83), Expect = 0.34
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = -2
Query: 583 EPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXY 404
+P+D+++ +L + + ++ RE G L YD ++N+VL +A
Sbjct: 9 KPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIING------------ 56
Query: 403 RTTKRTIPMLFVRGDGVILVSP 338
K + VRGD VI VSP
Sbjct: 57 -ENKGVYDRVLVRGDNVIFVSP 77
>UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein,
putative; n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein protein, putative - Trypanosoma cruzi
Length = 114
Score = 37.1 bits (82), Expect = 0.45
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = -2
Query: 559 SLDERIYVKMRNERELRGKLHAYDQHLNMVLGDA 458
+++ + + + + REL GKL YD+H+N+VLGDA
Sbjct: 9 NINRTLRIVLIDGRELTGKLLVYDRHMNVVLGDA 42
>UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=27; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm5 - Homo sapiens (Human)
Length = 91
Score = 37.1 bits (82), Expect = 0.45
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = -2
Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
PL+L+ + RI++ M++++E+ G L +D +NMVL D
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLED 53
>UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 100
Score = 36.7 bits (81), Expect = 0.59
Identities = 26/79 (32%), Positives = 36/79 (45%)
Frame = -2
Query: 577 LDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYRT 398
LDL R +D + VK+ RE+ G L YDQ LN+VL +A
Sbjct: 8 LDLARF-IDRGVRVKLSGGREVTGTLKGYDQLLNLVLDEAIEHLRDAEDALKISDET--- 63
Query: 397 TKRTIPMLFVRGDGVILVS 341
R + +L RG V++VS
Sbjct: 64 --RALGLLVCRGTSVMVVS 80
>UniRef50_O42978 Cluster: U6 snRNP-associated protein Lsm5; n=4;
Eukaryota|Rep: U6 snRNP-associated protein Lsm5 -
Schizosaccharomyces pombe (Fission yeast)
Length = 80
Score = 36.7 bits (81), Expect = 0.59
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = -2
Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
PL+LI + ++V M++ERE G L +D ++N+VL D
Sbjct: 7 PLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKD 46
>UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein G;
n=2; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein G - Entamoeba histolytica HM-1:IMSS
Length = 81
Score = 36.3 bits (80), Expect = 0.78
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = -2
Query: 589 VKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDA 458
+++P ++ L++RI VK+ +R + G L YD+++N+VL +A
Sbjct: 1 MEKPKPELKHYLEKRILVKIHGKRSIIGVLSGYDEYMNLVLDEA 44
>UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E
homolog; n=2; Bigelowiella natans|Rep: Small nucleolar
ribonucleoprotein E homolog - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 71
Score = 36.3 bits (80), Expect = 0.78
Identities = 15/43 (34%), Positives = 30/43 (69%)
Frame = -2
Query: 595 MTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVL 467
M++K + ++L ++E I ++++N+ L+G L +DQ LN+VL
Sbjct: 1 MSIKINIPDLKLFMEEEIQIQLKNKLCLKGTLRGFDQFLNIVL 43
>UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole
genome shotgun sequence; n=8; Eukaryota|Rep: Chromosome
chr13 scaffold_210, whole genome shotgun sequence -
Vitis vinifera (Grape)
Length = 113
Score = 36.3 bits (80), Expect = 0.78
Identities = 25/80 (31%), Positives = 38/80 (47%)
Frame = -2
Query: 577 LDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYRT 398
LDL + +D+ + VK+ R++ G L YDQ LN+VL +A
Sbjct: 23 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKTTDQT--- 78
Query: 397 TKRTIPMLFVRGDGVILVSP 338
R + ++ RG V+LVSP
Sbjct: 79 --RRLGLIVCRGTAVMLVSP 96
>UniRef50_A7D237 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: Like-Sm
ribonucleoprotein, core - Halorubrum lacusprofundi ATCC
49239
Length = 80
Score = 36.3 bits (80), Expect = 0.78
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = -2
Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVL 467
PLD++ SL+E + V +++ G L YDQH+N+V+
Sbjct: 5 PLDVLEASLEEPVTVHLKDGTTYYGILAGYDQHMNIVI 42
>UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_680_47464_47838 - Giardia lamblia
ATCC 50803
Length = 124
Score = 35.1 bits (77), Expect = 1.8
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = -2
Query: 562 LSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDA 458
L+L + + V++R+ R + G L AYD+HLN+V +A
Sbjct: 58 LALRKPVLVQLRSGRFITGVLKAYDRHLNLVFSEA 92
>UniRef50_Q55A45 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=2;
Dictyostelium discoideum|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 274
Score = 35.1 bits (77), Expect = 1.8
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = -2
Query: 556 LDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYRTTKRTIPM 377
++ R+ V +++ R + G+ A+D+H+N+V+ DA R KRT+ M
Sbjct: 14 INYRMRVTIQDGRVIVGRFLAFDKHMNVVICDA-----EEFRRIRQKGKEDREEKRTLGM 68
Query: 376 LFVRGDGVILVS 341
+ +RG+ V+ +S
Sbjct: 69 ILIRGETVVSMS 80
>UniRef50_Q4Q3L7 Cluster: Small nuclear ribonucleoprotein SmD2; n=7;
Trypanosomatidae|Rep: Small nuclear ribonucleoprotein
SmD2 - Leishmania major
Length = 103
Score = 35.1 bits (77), Expect = 1.8
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = -2
Query: 613 TENVAVMTVKE-PLDLIRLSLDE--RIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXX 443
T+ + TV + P L+ ++ E R++++ RN + L + A+D+H N+VL
Sbjct: 16 TKELLRTTVADGPFSLLDTAMKEKKRVFIQCRNSKALLAHVIAFDKHFNLVL-------- 67
Query: 442 XXXXXXXXXXXXYRTTKRTIPMLFVRGDGVILV 344
+RTI LF+RG+ VI +
Sbjct: 68 -KGVQEITESHGSEQKQRTIENLFLRGESVIFI 99
>UniRef50_A2FZR2 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 89
Score = 35.1 bits (77), Expect = 1.8
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -2
Query: 568 IRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
+R + ++++K+ N REL G L + DQ N+VL D
Sbjct: 16 LREMIGHKVFIKLENNRELEGTLMSLDQFGNLVLND 51
>UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 152
Score = 35.1 bits (77), Expect = 1.8
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Frame = -2
Query: 694 IQFKNSDYFNKT*NKLFS*QYLEMADDTENVAVMTVKE--PLDLIRLSLDE--RIYVKMR 527
+Q + S N N L Y + + + A E P L+ ++++ + ++++R
Sbjct: 18 MQIRQSIQQNIRINILLQSNYCQKGETQKRTAEEATLEKGPFGLLTITMNHNTQAFLELR 77
Query: 526 NERELRGKLHAYDQHLNMVL 467
N R+ G++ A+D+H+NM+L
Sbjct: 78 NNRKHLGRVKAFDRHMNMIL 97
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 35.1 bits (77), Expect = 1.8
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = -2
Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDA 458
P ++ L+ +IYVK+++ E GKL A D +N++L DA
Sbjct: 12 PFKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDA 52
>UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative;
n=2; Theileria|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 104
Score = 34.7 bits (76), Expect = 2.4
Identities = 24/84 (28%), Positives = 37/84 (44%)
Frame = -2
Query: 589 VKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXX 410
VK ++L + L++ +YVK RE++G L +D N+VL D
Sbjct: 11 VKSVINLNK-HLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSSKLTG- 68
Query: 409 XYRTTKRTIPMLFVRGDGVILVSP 338
KR + +L RG V +V P
Sbjct: 69 ----EKRNLGLLVARGTSVTVVYP 88
>UniRef50_A2FU85 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 111
Score = 34.7 bits (76), Expect = 2.4
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = -2
Query: 550 ERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYRTTKRTIPMLF 371
E + + +R+ R+L G + A D+H NM+L +R I LF
Sbjct: 35 EPLLIALRSNRKLYGYIKAVDRHWNMILEHVIEITPTPAKPGQPAAA---PIQRRINRLF 91
Query: 370 VRGDGVILVSP 338
+RGD VI + P
Sbjct: 92 LRGDNVICIYP 102
>UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein
NCU01930.1; n=2; Sordariomycetes|Rep: Putative
uncharacterized protein NCU01930.1 - Neurospora crassa
Length = 132
Score = 34.7 bits (76), Expect = 2.4
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -2
Query: 586 KEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
KE + ++ +D+RI VK RE+ G L YD +N+VL D
Sbjct: 52 KENILDLKKYMDQRITVKFNGGREVTGTLKGYDALMNLVLDD 93
>UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa
group|Rep: Predicted protein - Ajellomyces capsulatus
NAm1
Length = 171
Score = 34.7 bits (76), Expect = 2.4
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = -2
Query: 577 LDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYRT 398
LDL + +++ + VK RE+ G L YDQ +N+VL D
Sbjct: 85 LDLTKY-MEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDV---------REVMRDDEGNQ 134
Query: 397 TKRTIPMLFVRGDGVILVSP 338
T R++ ++ RG ++L+SP
Sbjct: 135 TTRSLGLIVARGTLLVLISP 154
>UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein,
putative (Small nuclear ribonucleoprotein (LSM7),
putative); n=2; Pezizomycotina|Rep: U6 snrna-associated
sm-like protein, putative (Small nuclear
ribonucleoprotein (LSM7), putative) - Aspergillus
fumigatus (Sartorya fumigata)
Length = 134
Score = 34.3 bits (75), Expect = 3.2
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -2
Query: 577 LDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
LDL + +D+ + VK RE+ G L YDQ +N+VL D
Sbjct: 53 LDLSKY-MDKEVKVKFNGGREVSGMLKGYDQLMNLVLDD 90
>UniRef50_Q06217 Cluster: Small nuclear ribonucleoprotein Sm D2;
n=31; Eukaryota|Rep: Small nuclear ribonucleoprotein Sm
D2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 110
Score = 34.3 bits (75), Expect = 3.2
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -2
Query: 580 PLDLIRLSLDER--IYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 407
P+ LI ++ R + + +RN ++ ++ A+D+H NMVL +
Sbjct: 30 PMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGKNVI---- 85
Query: 406 YRTTKRTIPMLFVRGDGVILV 344
+R I LF+RGD VI+V
Sbjct: 86 --NRERFISKLFLRGDSVIVV 104
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 33.5 bits (73), Expect = 5.5
Identities = 17/69 (24%), Positives = 37/69 (53%)
Frame = -2
Query: 556 LDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXYRTTKRTIPM 377
++ RI V ++++R + G L A+D+H+N+VL D + KR++ +
Sbjct: 5 INYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDC------QEYRRVKKGEEPKELKRSLGL 58
Query: 376 LFVRGDGVI 350
+ +RG+ ++
Sbjct: 59 IMLRGENIV 67
>UniRef50_Q8SQH7 Cluster: Probable U6 snRNA-associated Sm-like
protein; n=1; Encephalitozoon cuniculi|Rep: Probable U6
snRNA-associated Sm-like protein - Encephalitozoon
cuniculi
Length = 70
Score = 33.5 bits (73), Expect = 5.5
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -2
Query: 583 EPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVL 467
+P +++ L ER+ VK ++ G L +D+H+N++L
Sbjct: 3 DPFCFLKMYLKERVEVKTKSGEAYTGTLEGFDEHINLML 41
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 33.1 bits (72), Expect = 7.3
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = -2
Query: 589 VKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
++ PL ++ +L++ + VK++N E G+L D +N+VL D
Sbjct: 5 IENPLKSLKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKD 47
>UniRef50_A1RY58 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Thermofilum pendens Hrk 5|Rep: Like-Sm
ribonucleoprotein, core - Thermofilum pendens (strain
Hrk 5)
Length = 100
Score = 33.1 bits (72), Expect = 7.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -2
Query: 583 EPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDA 458
+P++ +R + ++VK+++ E GKL D +N+VL DA
Sbjct: 2 QPIEHLRNQSGKGVFVKLKDGSEYMGKLRMTDAAMNLVLDDA 43
>UniRef50_Q4PA95 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 148
Score = 32.7 bits (71), Expect = 9.7
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = -2
Query: 631 LEMADDTENVAVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
++ D N+A T +D + D+++ V +R+ ++L G L +YDQ N+VL D
Sbjct: 1 MDAHDIVSNIAFTTSGSLVDCV----DKKMLVVLRDGKKLIGVLRSYDQFANLVLQD 53
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 531,374,514
Number of Sequences: 1657284
Number of extensions: 8280227
Number of successful extensions: 17920
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 17476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17900
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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