Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b15r
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...   118   6e-27
Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical pr...    42   5e-04
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    36   0.023
Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...    31   0.85 
AL023816-1|CAA19430.2|  250|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score =  118 bits (283), Expect = 6e-27
 Identities = 59/102 (57%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
 Frame = -2

Query: 625 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXX 449
           MA + + V +  TV+EPLDL+RLSLDER+YVKMRN+RELRG+L A+DQHLNMVL +    
Sbjct: 1   MATEKKEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEET 60

Query: 448 XXXXXXXXXXXXXXYRTTKRTIPMLFVRGDGVILVSPPVRVS 323
                         Y+ TKR +PMLFVRGD VILVSPP+R S
Sbjct: 61  ITTREVDEDTFEEIYKQTKRVVPMLFVRGDSVILVSPPIRAS 102


>Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical
           protein C52E4.3 protein.
          Length = 118

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = -2

Query: 580 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 407
           PL ++  S+  + ++ +  RN ++L G++ A+D+H NMVL +                  
Sbjct: 28  PLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 87

Query: 406 YRTTK-RTIPMLFVRGDGVILV 344
               K R I  +F+RGD VILV
Sbjct: 88  KSVAKDRFISKMFLRGDSVILV 109


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = -2

Query: 580 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
           PL+LI   +  +I+V M+N++E+ G L  +D ++NMVL D
Sbjct: 14  PLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLED 53


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = -2

Query: 577 LDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 461
           +DL R  LD+ I VK +  RE  G L  +DQ LNMVL D
Sbjct: 14  VDLTRF-LDKEIRVKFQGGREASGVLRGFDQLLNMVLDD 51


>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
           protein T10G3.6 protein.
          Length = 97

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 544 IYVKMRNERELRGKLHAYDQHLNMVLGD 461
           + V+++N+  + G LH+ DQ+LNM L D
Sbjct: 15  VVVELKNDLSICGTLHSVDQYLNMKLTD 42


>AL023816-1|CAA19430.2|  250|Caenorhabditis elegans Hypothetical
           protein T05G11.2 protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 3   FYITLYSIIVYRHPSVIYKQHLRSSQFRLNIFIIICAIYLVNNYV 137
           F IT+  +I    P + YK   ++S   +   I+IC   L+N YV
Sbjct: 100 FLITIERVIATYFPVLFYKYRCKTSTIMIYTSILICG--LINQYV 142


>Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical
           protein F10B5.8 protein.
          Length = 608

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
 Frame = -2

Query: 616 DTENVAVMTVKEPLDLIR--------LSLDERIYVKMRNERELRGKLHAYDQHLNM 473
           + E + +M+  E  DLI+        LSL E I  K  N +EL  +L  YD HL +
Sbjct: 491 ENERLNIMSTAESEDLIKDKNCMPITLSLSEIIKGKKVNWKELSNELLLYDPHLQL 546


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,936,452
Number of Sequences: 27780
Number of extensions: 217306
Number of successful extensions: 477
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)