Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b15f
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...   100   2e-22
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    42   1e-04
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    37   0.003
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    30   0.24 
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   2.3  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    26   5.2  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   5.2  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   9.1  

>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score =  100 bits (240), Expect = 2e-22
 Identities = 47/89 (52%), Positives = 59/89 (66%)
 Frame = +2

Query: 158 AVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXX 337
           +   V EPLDL+RLSLDE +YVK+R +REL G+LHAYD+HLNMVLGDA            
Sbjct: 3   SAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEET 62

Query: 338 XXXXXXRTTKRTIPMLFVRGDGVILVSPP 424
                 +T ++   MLFVRGD VIL++PP
Sbjct: 63  DKDKALKTIRKHYEMLFVRGDSVILIAPP 91


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +2

Query: 179 PLDLIRLSLD--ERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 352
           PL +++ ++   +++ +  RN ++L  ++ A+D+H NMVL +                  
Sbjct: 29  PLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKKGK 88

Query: 353 XRTTKRTIPMLFVRGDGVILV 415
                R I  +F+RGDGV+LV
Sbjct: 89  AINKDRFISKMFLRGDGVVLV 109


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +2

Query: 179 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 298
           PL+LI   +   ++V M++ERE  G L  +D ++N+VL D
Sbjct: 7   PLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKD 46


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 182 LDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 298
           LDL R   D+RI       R++ G L  +DQ +N+VL D
Sbjct: 26  LDLSRYQ-DQRIQATFTGGRQITGILKGFDQLMNLVLDD 63


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 227 MRNERELRGKLHAYDQHLNMVL 292
           ++NE+ELR KL AY  + N V+
Sbjct: 735 LQNEKELRSKLEAYHINCNKVI 756


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 69  NLKIATTLTRHKTSYFHNNI*KW 137
           NLK+ +T+ ++ ++Y HN+   W
Sbjct: 205 NLKVVSTVAKYNSAYIHNSKKFW 227


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 319 GCYSFFGIS*YHIQMLIIGMQFASELS 239
           GC +F+ IS  H+Q+L++     + LS
Sbjct: 393 GCRTFYHISLSHLQILVLSRNHLTSLS 419


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 526 ESKTEDKNFITNKDGLLVKVLLYLNDI 446
           E ++E    +  +  LL KVLLYL D+
Sbjct: 382 ERRSESVELLKRESFLLKKVLLYLRDV 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,408
Number of Sequences: 5004
Number of extensions: 32823
Number of successful extensions: 73
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)