Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b15f
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297    128   3e-30
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184...    42   3e-04
07_01_0479 + 3606663-3607448                                           40   0.002
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332...    39   0.003
08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068           31   1.0  
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488...    29   3.1  

>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
          Length = 104

 Score =  128 bits (310), Expect = 3e-30
 Identities = 62/91 (68%), Positives = 69/91 (75%)
 Frame = +2

Query: 164 MTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXX 343
           + VKEPLDLIRLSLDERIYVK+R++RELRGKLHAYDQHLNM+LGD               
Sbjct: 14  IAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETY 73

Query: 344 XXXXRTTKRTIPMLFVRGDGVILVSPPVRVS 436
               RTTKRTIP LFVRGDGVILVSPP+R +
Sbjct: 74  EEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 104


>05_03_0462 -
           14316486-14316602,14316689-14316793,14318406-14318486,
           14318593-14318610
          Length = 106

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = +2

Query: 179 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 352
           PL ++ +S+  + ++ +  RN ++L G++ A+D+H NMVL +                  
Sbjct: 20  PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 79

Query: 353 XRTTK-RTIPMLFVRGDGVILV 415
               K R I  +F+RGD VI+V
Sbjct: 80  LPVNKDRFISKMFLRGDSVIIV 101


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/66 (31%), Positives = 36/66 (54%)
 Frame = +2

Query: 212 RIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTIPMLFV 391
           R+ V +++ R+L GK  A+D+H+N+VLGD                   R  +RT+ +L +
Sbjct: 16  RMRVTIQDGRQLVGKFMAFDRHMNLVLGDC-EEFRKLPPSKSSKTTGEREERRTLGLLLL 74

Query: 392 RGDGVI 409
           RG+ V+
Sbjct: 75  RGEEVV 80


>01_07_0305 -
           42631214-42631330,42631423-42631527,42633208-42633216,
           42635198-42636142,42636349-42636450,42637210-42637302
          Length = 456

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +2

Query: 206 DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXXRTTK-RTIPM 382
           D ++ +  +N ++L G++ A+D H NMVL +                      K R I  
Sbjct: 381 DIKVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISK 440

Query: 383 LFVRGDGVILV 415
           +F+RGD VI+V
Sbjct: 441 MFLRGDSVIIV 451


>08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068
          Length = 67

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/28 (39%), Positives = 21/28 (75%)
 Frame = +2

Query: 209 ERIYVKMRNERELRGKLHAYDQHLNMVL 292
           + + V+++N+  +RG LH+ DQ+LN+ L
Sbjct: 13  KEVTVELKNDLAIRGTLHSVDQYLNIKL 40


>03_04_0043 +
           16747103-16747137,16747237-16747259,16748735-16748856,
           16748980-16749042
          Length = 80

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +2

Query: 176 EPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVL 292
           +P DL +  +D+++ +K+   R + G L  +DQ +N+V+
Sbjct: 6   QPPDLKKY-MDKKLQIKLNANRVIVGTLRGFDQFMNLVV 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,153,810
Number of Sequences: 37544
Number of extensions: 162244
Number of successful extensions: 245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)