Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b15f
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13) 95 6e-20
SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15) 41 0.001
SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18) 31 0.59
SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7) 31 0.78
SB_52896| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0023) 29 3.2
SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_32724| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0029) 28 7.3
SB_22943| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025) 28 7.3
SB_21551| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0016) 27 9.7
>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
Length = 75
Score = 94.7 bits (225), Expect = 6e-20
Identities = 44/55 (80%), Positives = 49/55 (89%)
Frame = +2
Query: 134 MADDTENVAVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 298
MA+ E VA TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHLNM+L D
Sbjct: 1 MAETGEEVAPNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILSD 55
>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
Length = 443
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = +2
Query: 179 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 352
PL ++ S+ + ++ + RN R+L ++ A+D+H NMVL +
Sbjct: 18 PLSVLTQSVKNNTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKKA 77
Query: 353 XRTTK-RTIPMLFVRGDGVILV 415
K R I +F+RGD VILV
Sbjct: 78 KPVNKDRYIAKMFLRGDSVILV 99
>SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)
Length = 327
Score = 31.5 bits (68), Expect = 0.59
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +2
Query: 197 LSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXXXRTTKRTI 376
L ++ R+ +++ R G A+D+H+N++LGD R KR +
Sbjct: 34 LHINYRMRCTLQDGRVFIGTFLAFDKHMNVILGDC---DEFRKIKGKSSKAQEREEKRVL 90
Query: 377 PMLFVRGDGVILVS---PPV 427
++ +RG+ ++ ++ PPV
Sbjct: 91 GLVLLRGEHLVSMTVDGPPV 110
>SB_9221| Best HMM Match : Cornifin (HMM E-Value=6.7)
Length = 856
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 9 NRNTKTKR*PNTFNRHH*KY-NLKIATTLTRHKTSYFHNNI 128
+RNT+T + P T N H ++ N ++ +TLT KTS + NI
Sbjct: 324 HRNTRTSKYPGTINLVHRRHRNTRVLSTLT-SKTSAYPGNI 363
>SB_52896| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0023)
Length = 393
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +3
Query: 297 MPKKL*QPLKSTKKHTKKCTELQNELFLCYL*EEMVSYLFHHQYVLVFKLISFKYNKTLT 476
+P+K+ + L + H+ C E++N + L +L S+L +H LV LI +N T T
Sbjct: 144 LPRKISRILLGSVYHSTSCGEVENCMLLEHLQSNTESFLRNHPEGLV--LICGDFNPTST 201
>SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1001
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 297 MPKKL*QPLKSTKKHTKKCTELQNELFLCYL*EEMVSYLFHHQYVLVFKLISFKYNKTLT 476
+P+K+ + L + H+ C E++N L +L S+L +H LV LI +N T T
Sbjct: 842 LPRKISRILLGSVYHSTSCDEVENCRLLEHLQSNTESFLRNHPEGLV--LICGDFNPTST 899
>SB_32724| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0029)
Length = 302
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 297 MPKKL*QPLKSTKKHTKKCTELQNELFLCYL*EEMVSYLFHHQYVLVFKLISFKYNKTLT 476
+P+K+ + L + H+ C E++N L +L S+L +H LV LI +N T T
Sbjct: 110 LPRKISRILLGSVYHSTSCDEVENCRLLEHLQSNTESFLRNHPEGLV--LICGDFNPTST 167
>SB_22943| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 297 MPKKL*QPLKSTKKHTKKCTELQNELFLCYL*EEMVSYLFHHQYVLVFKLISFKYNKTLT 476
+P+K+ + L + H+ C E++N L +L S+L +H LV LI +N T T
Sbjct: 219 LPRKISRILLGSVYHSTSCDEVENCRLLEHLQSNTESFLRNHPEGLV--LICGDFNPTST 276
>SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)
Length = 731
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 297 MPKKL*QPLKSTKKHTKKCTELQNELFLCYL*EEMVSYLFHHQYVLVFKLISFKYNKTLT 476
+P+K+ + L + H+ C E++N L +L S+L +H LV LI +N T T
Sbjct: 493 LPRKISRILLGSVYHSTSCDEVENCRLLEHLQSNTESFLRNHPEGLV--LICGDFNPTST 550
>SB_21551| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0016)
Length = 999
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 297 MPKKL*QPLKSTKKHTKKCTELQNELFLCYL*EEMVSYLFHHQYVLVFKLISFKYNKTLT 476
+P+K+ + L + H+ C E++N L +L S+L +H LV LI +N T T
Sbjct: 423 LPRKISRILLGSVYHSTSCGEVENCRLLEHLQSNTESFLRNHPEGLV--LICGDFNPTST 480
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,905,937
Number of Sequences: 59808
Number of extensions: 222265
Number of successful extensions: 390
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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