Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b15f
(635 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 132 1e-30
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 132 1e-30
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 132 1e-30
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 132 1e-30
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 132 1e-30
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 40 0.006
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 40 0.006
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 40 0.006
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 40 0.006
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 37 0.052
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 37 0.052
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 37 0.052
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 132 bits (319), Expect = 1e-30
Identities = 64/101 (63%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Frame = +2
Query: 134 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXX 310
MADD + TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHLNM+LGD
Sbjct: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
Query: 311 XXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 433
++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 61 VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV 101
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 132 bits (319), Expect = 1e-30
Identities = 64/101 (63%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Frame = +2
Query: 134 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXX 310
MADD + TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHLNM+LGD
Sbjct: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
Query: 311 XXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 433
++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 61 VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV 101
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 132 bits (319), Expect = 1e-30
Identities = 64/101 (63%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Frame = +2
Query: 134 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXX 310
MADD + TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHLNM+LGD
Sbjct: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
Query: 311 XXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 433
++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 61 VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV 101
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 132 bits (319), Expect = 1e-30
Identities = 64/101 (63%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Frame = +2
Query: 134 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXX 310
MADD + TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHLNM+LGD
Sbjct: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
Query: 311 XXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 433
++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 61 VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV 101
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 132 bits (319), Expect = 1e-30
Identities = 64/101 (63%), Positives = 74/101 (73%), Gaps = 1/101 (0%)
Frame = +2
Query: 134 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXX 310
MADD + TV+EPLDLIRLSLDERIYVKMRN+RELRG+LHAYDQHLNM+LGD
Sbjct: 1 MADDVDQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
Query: 311 XXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 433
++TKR IPMLFVRGDGV+LV+PP+RV
Sbjct: 61 VTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRV 101
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 40.3 bits (90), Expect = 0.006
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +2
Query: 179 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 352
PL ++ S+ + ++ + RN ++L G++ A+D+H NMVL +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 353 XRTTK-RTIPMLFVRGDGVILV 415
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 40.3 bits (90), Expect = 0.006
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +2
Query: 179 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 352
PL ++ S+ + ++ + RN ++L G++ A+D+H NMVL +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 353 XRTTK-RTIPMLFVRGDGVILV 415
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 40.3 bits (90), Expect = 0.006
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +2
Query: 179 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 352
PL ++ S+ + ++ + RN ++L G++ A+D+H NMVL +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 353 XRTTK-RTIPMLFVRGDGVILV 415
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 40.3 bits (90), Expect = 0.006
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Frame = +2
Query: 179 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 352
PL ++ S+ + ++ + RN ++L G++ A+D+H NMVL +
Sbjct: 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query: 353 XRTTK-RTIPMLFVRGDGVILV 415
K R I +F+RGD VI+V
Sbjct: 88 KPVNKDRYISKMFLRGDSVIVV 109
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 37.1 bits (82), Expect = 0.052
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +2
Query: 179 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 298
PL+L+ + RI++ M++++E+ G L +D +NMVL D
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLED 53
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 37.1 bits (82), Expect = 0.052
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +2
Query: 179 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 298
PL+L+ + RI++ M++++E+ G L +D +NMVL D
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLED 53
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 37.1 bits (82), Expect = 0.052
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +2
Query: 179 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 298
PL+L+ + RI++ M++++E+ G L +D +NMVL D
Sbjct: 14 PLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLED 53
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,067,415
Number of Sequences: 237096
Number of extensions: 1006057
Number of successful extensions: 1390
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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