Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b15f
         (635 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001552-1|AAN71307.1|  103|Drosophila melanogaster RE11655p pro...   138   6e-33
AE014297-3433|AAN13967.1|  103|Drosophila melanogaster CG31184-P...   138   6e-33
AY069315-1|AAL39460.1|  119|Drosophila melanogaster LD03002p pro...    41   0.001
AE014297-442|AAF54135.1|  119|Drosophila melanogaster CG1249-PA ...    41   0.001
AY113521-1|AAM29526.1|   91|Drosophila melanogaster RE60135p pro...    38   0.011
AE014296-1060|AAF50703.1|   91|Drosophila melanogaster CG6610-PA...    38   0.011
L02919-1|AAA28858.1|  199|Drosophila melanogaster ribonucleoprot...    34   0.14 
AY061171-1|AAL28719.1|  199|Drosophila melanogaster LD14049p pro...    34   0.14 
AE014134-1881|AAF52947.1|  199|Drosophila melanogaster CG5352-PA...    34   0.14 
AE014296-2128|AAF49929.1|   95|Drosophila melanogaster CG10418-P...    30   3.0  
BT025925-1|ABG02169.1|  287|Drosophila melanogaster IP12320p pro...    29   7.0  
AY113637-1|AAM29642.1|  110|Drosophila melanogaster RH73529p pro...    29   7.0  
AE014134-2763|AAF53562.1|  110|Drosophila melanogaster CG13277-P...    29   7.0  

>BT001552-1|AAN71307.1|  103|Drosophila melanogaster RE11655p
           protein.
          Length = 103

 Score =  138 bits (334), Expect = 6e-33
 Identities = 68/102 (66%), Positives = 79/102 (77%), Gaps = 2/102 (1%)
 Frame = +2

Query: 134 MADDTENVA--VMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXX 307
           MAD+TE ++  ++ VKEPLDLIRLSLDE++YVKMRNERELRG+LHA+DQHLNMVLGDA  
Sbjct: 1   MADETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEE 60

Query: 308 XXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 433
                           +T KRTIPMLFVRGDGVILVSPP+RV
Sbjct: 61  TVTTVEIDEETYEEVYKTAKRTIPMLFVRGDGVILVSPPMRV 102


>AE014297-3433|AAN13967.1|  103|Drosophila melanogaster CG31184-PA
           protein.
          Length = 103

 Score =  138 bits (334), Expect = 6e-33
 Identities = 68/102 (66%), Positives = 79/102 (77%), Gaps = 2/102 (1%)
 Frame = +2

Query: 134 MADDTENVA--VMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXX 307
           MAD+TE ++  ++ VKEPLDLIRLSLDE++YVKMRNERELRG+LHA+DQHLNMVLGDA  
Sbjct: 1   MADETEQLSQVILPVKEPLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEE 60

Query: 308 XXXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRV 433
                           +T KRTIPMLFVRGDGVILVSPP+RV
Sbjct: 61  TVTTVEIDEETYEEVYKTAKRTIPMLFVRGDGVILVSPPMRV 102


>AY069315-1|AAL39460.1|  119|Drosophila melanogaster LD03002p
           protein.
          Length = 119

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = +2

Query: 179 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 352
           PL ++  S+  + ++ +  RN ++L G++ A+D+H NMVL +                  
Sbjct: 27  PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 86

Query: 353 XRTTK-RTIPMLFVRGDGVILV 415
               K R I  +F+RGD VILV
Sbjct: 87  KPVNKDRFISKMFLRGDSVILV 108


>AE014297-442|AAF54135.1|  119|Drosophila melanogaster CG1249-PA
           protein.
          Length = 119

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = +2

Query: 179 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 352
           PL ++  S+  + ++ +  RN ++L G++ A+D+H NMVL +                  
Sbjct: 27  PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKV 86

Query: 353 XRTTK-RTIPMLFVRGDGVILV 415
               K R I  +F+RGD VILV
Sbjct: 87  KPVNKDRFISKMFLRGDSVILV 108


>AY113521-1|AAM29526.1|   91|Drosophila melanogaster RE60135p
           protein.
          Length = 91

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +2

Query: 179 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 298
           PL+L+   +  RI++ M+N++E+ G L  +D  +NM+L D
Sbjct: 15  PLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDD 54


>AE014296-1060|AAF50703.1|   91|Drosophila melanogaster CG6610-PA
           protein.
          Length = 91

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +2

Query: 179 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 298
           PL+L+   +  RI++ M+N++E+ G L  +D  +NM+L D
Sbjct: 15  PLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDD 54


>L02919-1|AAA28858.1|  199|Drosophila melanogaster ribonucleoprotein
           protein.
          Length = 199

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 19/82 (23%), Positives = 40/82 (48%)
 Frame = +2

Query: 164 MTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXX 343
           MT+ +   +I+  L+ R+ + +++ R   G   A+D+H+N++LGD               
Sbjct: 1   MTIGKNNKMIQ-HLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDC---EEFRKIRSKNS 56

Query: 344 XXXXRTTKRTIPMLFVRGDGVI 409
               R  KR +  + +RG+ ++
Sbjct: 57  KVPEREEKRVLGFVLLRGENIV 78


>AY061171-1|AAL28719.1|  199|Drosophila melanogaster LD14049p
           protein.
          Length = 199

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 19/82 (23%), Positives = 40/82 (48%)
 Frame = +2

Query: 164 MTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXX 343
           MT+ +   +I+  L+ R+ + +++ R   G   A+D+H+N++LGD               
Sbjct: 1   MTIGKNNKMIQ-HLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDC---EEFRKIRSKNS 56

Query: 344 XXXXRTTKRTIPMLFVRGDGVI 409
               R  KR +  + +RG+ ++
Sbjct: 57  KVPEREEKRVLGFVLLRGENIV 78


>AE014134-1881|AAF52947.1|  199|Drosophila melanogaster CG5352-PA
           protein.
          Length = 199

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 19/82 (23%), Positives = 40/82 (48%)
 Frame = +2

Query: 164 MTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXX 343
           MT+ +   +I+  L+ R+ + +++ R   G   A+D+H+N++LGD               
Sbjct: 1   MTIGKNNKMIQ-HLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDC---EEFRKIRSKNS 56

Query: 344 XXXXRTTKRTIPMLFVRGDGVI 409
               R  KR +  + +RG+ ++
Sbjct: 57  KVPEREEKRVLGFVLLRGENIV 78


>AE014296-2128|AAF49929.1|   95|Drosophila melanogaster CG10418-PA
           protein.
          Length = 95

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 209 ERIYVKMRNERELRGKLHAYDQHLNMVLGD 298
           + + V+++N+  + G LH+ DQ+LN+ L D
Sbjct: 13  KEVVVELKNDLSICGTLHSVDQYLNIKLTD 42


>BT025925-1|ABG02169.1|  287|Drosophila melanogaster IP12320p
           protein.
          Length = 287

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 182 LDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVL 292
           LDL +  L+++I VK    RE  G L  YD  LN+VL
Sbjct: 199 LDLSKY-LEKQIRVKFAGGREASGILKGYDALLNLVL 234


>AY113637-1|AAM29642.1|  110|Drosophila melanogaster RH73529p
           protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 182 LDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVL 292
           LDL +  L+++I VK    RE  G L  YD  LN+VL
Sbjct: 22  LDLSKY-LEKQIRVKFAGGREASGILKGYDALLNLVL 57


>AE014134-2763|AAF53562.1|  110|Drosophila melanogaster CG13277-PA
           protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +2

Query: 182 LDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVL 292
           LDL +  L+++I VK    RE  G L  YD  LN+VL
Sbjct: 22  LDLSKY-LEKQIRVKFAGGREASGILKGYDALLNLVL 57


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,999,876
Number of Sequences: 53049
Number of extensions: 313051
Number of successful extensions: 508
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)