Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b15f
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...   118   5e-27
Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical pr...    42   4e-04
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    36   0.018
Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...    31   0.69 
Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score =  118 bits (283), Expect = 5e-27
 Identities = 58/102 (56%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
 Frame = +2

Query: 134 MADDTENVAVM-TVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXX 310
           MA + + V +  TV+EPLDL+RLSLDER+YVKMRN+RELRG+L A+DQHLNMVL +    
Sbjct: 1   MATEKKEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEET 60

Query: 311 XXXXXXXXXXXXXXXRTTKRTIPMLFVRGDGVILVSPPVRVS 436
                          + TKR +PMLFVRGD VILVSPP+R S
Sbjct: 61  ITTREVDEDTFEEIYKQTKRVVPMLFVRGDSVILVSPPIRAS 102


>Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical
           protein C52E4.3 protein.
          Length = 118

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = +2

Query: 179 PLDLIRLSL--DERIYVKMRNERELRGKLHAYDQHLNMVLGDAXXXXXXXXXXXXXXXXX 352
           PL ++  S+  + ++ +  RN ++L G++ A+D+H NMVL +                  
Sbjct: 28  PLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 87

Query: 353 XRTTK-RTIPMLFVRGDGVILV 415
               K R I  +F+RGD VILV
Sbjct: 88  KSVAKDRFISKMFLRGDSVILV 109


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +2

Query: 179 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 298
           PL+LI   +  +I+V M+N++E+ G L  +D ++NMVL D
Sbjct: 14  PLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLED 53


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 20/39 (51%), Positives = 24/39 (61%)
 Frame = +2

Query: 182 LDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGD 298
           +DL R  LD+ I VK +  RE  G L  +DQ LNMVL D
Sbjct: 14  VDLTRF-LDKEIRVKFQGGREASGVLRGFDQLLNMVLDD 51


>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
           protein T10G3.6 protein.
          Length = 97

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 215 IYVKMRNERELRGKLHAYDQHLNMVLGD 298
           + V+++N+  + G LH+ DQ+LNM L D
Sbjct: 15  VVVELKNDLSICGTLHSVDQYLNMKLTD 42


>Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical
           protein F10B5.8 protein.
          Length = 608

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
 Frame = +2

Query: 143 DTENVAVMTVKEPLDLIR--------LSLDERIYVKMRNERELRGKLHAYDQHLNM 286
           + E + +M+  E  DLI+        LSL E I  K  N +EL  +L  YD HL +
Sbjct: 491 ENERLNIMSTAESEDLIKDKNCMPITLSLSEIIKGKKVNWKELSNELLLYDPHLQL 546


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,868,063
Number of Sequences: 27780
Number of extensions: 179156
Number of successful extensions: 362
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)