Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b14r
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.9  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 575 QENISLQYFYHDL-FEI*FAYGIKLIIXCTVVXI 477
           ++N+ +   Y D  + I FAY I LI+ CTV  +
Sbjct: 802 EDNLLVCNSYVDASYMIAFAYPIMLIVVCTVYAV 835


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 162 IVATNLKNNLLITNSW 209
           ++  NLKN ++ TN W
Sbjct: 65  LIDVNLKNQIMTTNLW 80


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 162 IVATNLKNNLLITNSW 209
           ++  NLKN ++ TN W
Sbjct: 65  LIDVNLKNQIMTTNLW 80


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 162 IVATNLKNNLLITNSW 209
           ++  NLKN ++ TN W
Sbjct: 61  LIDVNLKNQIMTTNLW 76


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 162 IVATNLKNNLLITNSW 209
           ++  NLKN ++ TN W
Sbjct: 57  LIDVNLKNQIMTTNVW 72


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 162 IVATNLKNNLLITNSW 209
           I+  + KN LLITN W
Sbjct: 60  IIDVDEKNQLLITNLW 75


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 162 IVATNLKNNLLITNSW 209
           ++  NLKN ++ TN W
Sbjct: 70  LIEMNLKNQVMTTNVW 85


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 162 IVATNLKNNLLITNSW 209
           ++  NLK+ +L TN W
Sbjct: 57  LIDLNLKDQILTTNVW 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,331
Number of Sequences: 438
Number of extensions: 1865
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)