Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b14f
(631 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 40 0.002
SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19) 34 0.083
SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13) 34 0.11
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0) 33 0.19
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_8425| Best HMM Match : EGF (HMM E-Value=0) 32 0.44
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6) 31 0.77
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_44384| Best HMM Match : Kazal_1 (HMM E-Value=1.4e-21) 29 2.4
SB_15403| Best HMM Match : CH (HMM E-Value=0) 29 2.4
SB_33512| Best HMM Match : Kazal_1 (HMM E-Value=2.6e-20) 29 3.1
SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0) 29 4.1
SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_58026| Best HMM Match : ANF_receptor (HMM E-Value=0) 28 7.2
SB_36366| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_19761| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_34796| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_19076| Best HMM Match : HECT (HMM E-Value=0) 27 9.5
SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Frame = +3
Query: 126 VCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKCACC---------PACVTLLGEGATCK 275
VCG+D +N C L CPKN +H G CA C CVT L + A C
Sbjct: 1157 VCGSDKVSYRNKCYMIALNCPKNKYVYVKHEGYCAPCRLAECHKVYAKCVTTLYQTARCV 1216
Query: 276 IYS-KELGETPSAVCKEPLKCIKRVC 350
+ +E AVC +K + C
Sbjct: 1217 CPTLQECAARKGAVCASDMKTYQSEC 1242
Score = 34.7 bits (76), Expect = 0.063
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +3
Query: 120 ALVCGTD-YCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELG 296
A VCGTD + CI C R +HAG+C C V G C + G
Sbjct: 372 APVCGTDDRTYPSECIMKTSACADKKAVRVKHAGECGPCGTLVCT--NGKNC--VTSHQG 427
Query: 297 ETPSAVCKEP 326
T AVC P
Sbjct: 428 LTRQAVCACP 437
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Frame = +3
Query: 126 VCGTDYCEK-NPCIQPPLVCPKNTEHRARHAGKCACC 233
VCGTD N C+ C K H G C C
Sbjct: 229 VCGTDKSSYLNECVMKARACRKEKSVTVAHRGFCGAC 265
>SB_39831| Best HMM Match : Kazal_1 (HMM E-Value=2.4e-19)
Length = 173
Score = 34.3 bits (75), Expect = 0.083
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = +3
Query: 126 VCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGA-TCKIYSKELGE 299
VCG+D NPC+ C N +H GKC +C +G CK+ +G
Sbjct: 37 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSCEQKKCKGTKVCKM----IGN 92
Query: 300 TPSAVCKEPLKCIKRVC 350
P + C K C
Sbjct: 93 KPRCMRPPQTACSKVRC 109
>SB_34870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 103 RQQRTVLWYVVQTTVKKIHAYSHHLFALRTLSIAPD 210
R +R VLW V + ++ + A+S+ LF+L + + PD
Sbjct: 171 RSERRVLWDVASSKIRAVTAFSNSLFSLNSNAFCPD 206
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Frame = +3
Query: 177 VCPKNTEHRARHAGKCACCPACVTLLG-EGAT-------CKIYSKELGETPSAVCKEPLK 332
+CP NT KC CPA ++ G +GAT CK Y E ++ +K
Sbjct: 2764 LCPPNTYQDQEQQSKCHMCPAGLSTFGLQGATSKDQCRECKDYEPEDKYGDCTTWRQQMK 2823
Query: 333 CIK 341
C+K
Sbjct: 2824 CVK 2826
>SB_13882| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.2e-13)
Length = 340
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Frame = +3
Query: 177 VCPKNTEHRARHAGKCACCPACVTLLG-EGAT-------CKIYSKELGETPSAVCKEPLK 332
+CP NT KC CPA ++ G +GAT CK Y E ++ +K
Sbjct: 65 LCPPNTYQDQEQQSKCHMCPAGLSTFGLQGATSKDQCRECKDYEPEDKYGDCTTWRQQMK 124
Query: 333 CIK 341
C+K
Sbjct: 125 CVK 127
>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 293
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = +3
Query: 126 VCGTD-YCEKNPCIQPPLVCPKNTEHRARHAGKCA-----CCPAC 242
VCG+D NPC+ VC N + R +H G C C P C
Sbjct: 129 VCGSDGKTYDNPCVFKIAVCQMNGQLRLKHRGACGSRPDKCAPIC 173
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Frame = +3
Query: 126 VCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGA-TCKIYSKE--L 293
VCG+D NPC+ C N +H GKC +C +G CK+ +
Sbjct: 180 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKCGSSQSCEQKKCKGTKVCKMIGNKPRC 239
Query: 294 GETPSAVCKEPLKC 335
P C E ++C
Sbjct: 240 MRPPQTDCSE-VRC 252
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 32.7 bits (71), Expect = 0.25
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +3
Query: 126 VCGTDY-CEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGET 302
VCG+D N C+ C NT R G C C +TCK +
Sbjct: 1217 VCGSDNNTYDNECLMRQQACVANTTVAVRRKGDCDPCSNVTCDSPPYSTCKAQD----DQ 1272
Query: 303 PSAVCKEPL-KCIKRV 347
P+ VC EP K +K V
Sbjct: 1273 PTCVCVEPCPKTLKPV 1288
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 123 LVCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKCACC 233
LVCGTD N C+ C N+ + + G C C
Sbjct: 1519 LVCGTDNITYSNECLMKYQACRTNSALKVKRKGDCDVC 1556
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Frame = +3
Query: 126 VCGTD-YCEKNPCIQPPLVCPKNTEHRARHAGKCACCP--AC-------VTLLGEGATCK 275
VCG+D N C+ C N R+ G C C +C T++ TC
Sbjct: 1660 VCGSDGKTYDNECVLRMAACESNRTLAVRNEGNCGLCEGFSCDSVPYSRCTIINGSPTC- 1718
Query: 276 IYSKELGETPSAVCKEPLKCIKRVC 350
+ T VC L+ VC
Sbjct: 1719 VCPPSCPNTLDPVCGSDLQSYDNVC 1743
>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
Length = 1955
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +3
Query: 162 IQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETPSAVCKEPLKC 335
++P L CPK T A C+ CP + G GA ++ S+ C+ +C
Sbjct: 390 VEPCLPCPKGTYQTAIGQMSCSECPGTKSTHGPGADSHDMCLDIDNCASSPCQNGGRC 447
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.5 bits (68), Expect = 0.58
Identities = 20/66 (30%), Positives = 26/66 (39%)
Frame = +3
Query: 129 CGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETPS 308
C + C KN PP+VCPK+ E CC C SK + + P
Sbjct: 1785 CPSTCCIKN---SPPVVCPKSCETTCTPDCPVMCCKNSSPATECPTICA--SKCISKCPE 1839
Query: 309 AVCKEP 326
CK+P
Sbjct: 1840 KCCKQP 1845
>SB_5983| Best HMM Match : MIF4G (HMM E-Value=1.6)
Length = 410
Score = 31.1 bits (67), Expect = 0.77
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 88 WWHALRQQRTVLWYVVQTTVKKIHAYSHH 174
W HA R +VLW+++++ +KK++ + H
Sbjct: 135 WSHARRNFGSVLWWLLESRIKKVNKANRH 163
>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = +3
Query: 93 ACVASAAYGALVCGTDYCEKNPCIQPPLVCPKNT-EHRARHAGKCACC---PACVTLLGE 260
+CV +A +G C C P+ C T + R+ CA PAC T LGE
Sbjct: 314 SCVCAAGWGGSTCSLPEC--------PITCTSGTCDLTVRYCSGCAAGFTGPACNTSLGE 365
Query: 261 G 263
G
Sbjct: 366 G 366
>SB_44384| Best HMM Match : Kazal_1 (HMM E-Value=1.4e-21)
Length = 85
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 126 VCGTDYCE-KNPCIQPPLVCPKNTEHRARHAGKC 224
VCG+D NPC+ C N +H GKC
Sbjct: 51 VCGSDNVTYSNPCMLRSATCKSNGTITMKHRGKC 84
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Frame = +3
Query: 126 VCGTD-YCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGET 302
+CGTD N C + T H G C P+C L CK YS +
Sbjct: 1246 ICGTDGKTYNNDKDLESAACAQQTSIVRWHKGPCTVEPSCANL-----QCKYYSYCIVRD 1300
Query: 303 PSAV--CKEPLKC--IK-RVC 350
AV C +P C +K RVC
Sbjct: 1301 GGAVCTCPDPAACPLVKSRVC 1321
>SB_33512| Best HMM Match : Kazal_1 (HMM E-Value=2.6e-20)
Length = 87
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +3
Query: 126 VCGTDY-CEKNPCIQPPLVCPKNTEHRARHAGKCACCP 236
VCG+D N C+ C NT R G C CP
Sbjct: 10 VCGSDNNTYDNECLMRQQACVANTTVAVRRKGDCEPCP 47
>SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 320
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = +3
Query: 126 VCGTDY-CEKNPCIQPPLVCPKNTEHRARHAGKCACCP 236
VCGTD N C+ C N R G C CP
Sbjct: 172 VCGTDNNTYDNECLMRQQACVANATVAVRRKGHCEPCP 209
>SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/68 (22%), Positives = 27/68 (39%)
Frame = +3
Query: 297 ETPSAVCKEPLKCIKRVCTKLV*SFSLAGKYKLAILLSRPVRNIICVRNKIDNNMHCSKY 476
E + ++ LK + VC K + G + L ++ V + N+H + Y
Sbjct: 246 EKKKTIFRDLLKLLDEVCKKAKCHVLIGGDFNLKYAIAETVVTEVVQERSNQYNLHTNGY 305
Query: 477 RNLKLKNM 500
+N K M
Sbjct: 306 QNKPRKKM 313
>SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 439 RTQIIFRTGRDRSIASLYFPANENDYTSLVQTLLMHLRG-SLHTAEGVSPSSFE*ILQVA 263
RT IFR RD+ + +L+F NE T L+M L +G+S S +L
Sbjct: 143 RTTAIFRHARDKHV-TLFFFINEKLNTQHKTILIMKSPDPRLKYIDGMSQSEMRLVLVKY 201
Query: 262 PSPS 251
P PS
Sbjct: 202 PLPS 205
>SB_58026| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 850
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +3
Query: 132 GTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATC 272
GT E C L CP+ T R A C+ CP E +C
Sbjct: 506 GTMQSESVACCWECLQCPEGTVTSIRGATNCSTCPVTQKSNRERTSC 552
>SB_36366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 462 HCSKYRNLKLKNMN 503
HCSKYRN+K K +N
Sbjct: 264 HCSKYRNIKQKYIN 277
>SB_19761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 279 KSCKLHLHQVKLH-KRDNKHTFQRVWRDAQCS 187
K+ K H+ VK H KR N TF ++ QC+
Sbjct: 27 KTVKFHVFSVKFHEKRSNSTTFGQIPPSRQCT 58
>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 114 YGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAG 218
YG Y EK+P + PP V PK+ AR G
Sbjct: 884 YGKTFRLNGYNEKSPKVSPPPVKPKSYSPEARWCG 918
>SB_34796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.5 bits (58), Expect = 9.5
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = +2
Query: 38 EKRIQKFQNENVDFYNAGGMRCVSSVRCFGMWY 136
+ +Q+FQ +VD + C+ + C +W+
Sbjct: 53 DPNVQRFQRSSVDTFLVSSSLCLGDLCCIKLWH 85
>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
Length = 2018
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +3
Query: 216 GKCACCPACVTLLGEGATCKIYSKELGETPSAVCKEPLKC 335
G CC C + G CK+ K T C E KC
Sbjct: 546 GSLCCCTECARVCHRGHDCKL--KRTSPTAYCDCWEKCKC 583
>SB_48390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 153 NPCIQPPLVCPKNTEHRARHAGKCACCPACV 245
N C+ P L C N E+R R K CC + +
Sbjct: 162 NSCLNPFLYCLTNKEYR-REFTKLLCCKSAI 191
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,185,941
Number of Sequences: 59808
Number of extensions: 408471
Number of successful extensions: 1081
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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