Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b14f
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical pr...    32   0.29 
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    31   0.90 
Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    29   2.7  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     29   2.7  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     29   2.7  
Z82083-2|CAB04970.1|  263|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z75533-8|CAA99821.1|  464|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical p...    28   4.8  
Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    27   8.4  
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical
           protein C46C2.6a protein.
          Length = 195

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 180 CPKNTEHRARHAGKCACCPACVTLLGEGATC-KIYSKELGETPSAVCK-EPLKC 335
           CP + +   +H+G+CA   AC+     G  C K++S ++  T    CK +P+ C
Sbjct: 60  CPSDYDFIRQHSGRCADGTACIPDSSFGEPCIKLFSYQM--TKKFCCKSDPIDC 111


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
 Frame = +3

Query: 132 GTDYCEKNPCIQPPLVCPKNTEHRARHAGKCA-CCPACVTLLGEGATCKIYSKELGETPS 308
           G D C    C   P  CP N     R +G C  CCP   T +  G  C + S   G    
Sbjct: 530 GVD-CNNGACCPLP-TCPNNIASSQRCSGGCTNCCPVGQTCM-NGGCCDLPSCPSGGFAI 586

Query: 309 AVC 317
           ++C
Sbjct: 587 SMC 589


>Z95559-9|CAI46625.1|  510|Caenorhabditis elegans Hypothetical
           protein Y41E3.18 protein.
          Length = 510

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 186 KNTEHRARHAGKCACCPACVTLLGEGA 266
           K T HR +H    ACCP C  ++   A
Sbjct: 147 KGTWHRVKHVVFVACCPPCCCIIQRSA 173


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
 Frame = +3

Query: 156 PCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGA-------TCKIYSKELGETPSAV 314
           PC++P   C  +  H+      C  C      +  G         C I S   G     V
Sbjct: 642 PCVRPHS-CDHSVSHKCHGEQNCPPCTQLTEKMCYGGHRVRKNIPCHIDSVSCG----VV 696

Query: 315 CKEPLKCIKRVCTK 356
           CK+PLKC   VC +
Sbjct: 697 CKKPLKCGVHVCQR 710


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = -1

Query: 430 IIFRTGRDRSIASLYFPANENDYTSLVQTLLMH 332
           ++FR+ R R  ++  FP  ++ Y+++V+T ++H
Sbjct: 47  VVFRSNRQRDRSTPIFPIIKHFYSTVVRTYILH 79


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = +3

Query: 132 GTDYCEKNPCIQPPLVCPKNTEHRARHA-GKCACCPACVTLLGEGATCKIYSKELGETPS 308
           GT   +++P +   LVC  N   R     GKC C P       + A C +     G    
Sbjct: 302 GTSGAKEHP-LASVLVCESNCNQRGECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVFSG 360

Query: 309 AVC 317
            +C
Sbjct: 361 GIC 363


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = +3

Query: 132 GTDYCEKNPCIQPPLVCPKNTEHRARHA-GKCACCPACVTLLGEGATCKIYSKELGETPS 308
           GT   +++P +   LVC  N   R     GKC C P       + A C +     G    
Sbjct: 244 GTSGAKEHP-LASVLVCESNCNQRGECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVFSG 302

Query: 309 AVC 317
            +C
Sbjct: 303 GIC 305


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = +3

Query: 132 GTDYCEKNPCIQPPLVCPKNTEHRARHA-GKCACCPACVTLLGEGATCKIYSKELGETPS 308
           GT   +++P +   LVC  N   R     GKC C P       + A C +     G    
Sbjct: 426 GTSGAKEHP-LASVLVCESNCNQRGECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVFSG 484

Query: 309 AVC 317
            +C
Sbjct: 485 GIC 487


>Z82083-2|CAB04970.1|  263|Caenorhabditis elegans Hypothetical
           protein ZK1010.4 protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 69  TLIFIMLVA--CVASAAYGALVCGTDYCEKNPCI 164
           T IF++LVA   V  A   + VCG+ YC   P +
Sbjct: 5   TTIFLVLVAGAVVTEACLSSGVCGSSYCAAPPAV 38


>Z75533-8|CAA99821.1|  464|Caenorhabditis elegans Hypothetical
           protein C54G4.9 protein.
          Length = 464

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 5   FSILTCTQDYYEKRIQKFQNEN 70
           FSILTCT    E RI +F  EN
Sbjct: 443 FSILTCTYKNAEDRILEFMKEN 464


>Z71181-9|CAD44140.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
 Frame = +3

Query: 72  LIFIMLVACVASAAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTL 251
           L+F  L+   A      L CGT  C+K+ C       P  +        +C CC  C+  
Sbjct: 9   LLFTFLIISNAKNQKTTL-CGT--CDKDSC-------PDVSGCEQLKKDQCDCCEVCIRQ 58

Query: 252 LGE-----GATCKIY---SKELGETPSAVCKEPL--KCIKRVC 350
           +GE     G  C  +    +E     S+ CKE +   C+K +C
Sbjct: 59  IGETCDGPGLVCDSHLSCHQENDLDGSSRCKERMHDDCLKAIC 101


>Z71178-15|CAD44087.1|  960|Caenorhabditis elegans Hypothetical
           protein B0024.14b protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
 Frame = +3

Query: 72  LIFIMLVACVASAAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTL 251
           L+F  L+   A      L CGT  C+K+ C       P  +        +C CC  C+  
Sbjct: 9   LLFTFLIISNAKNQKTTL-CGT--CDKDSC-------PDVSGCEQLKKDQCDCCEVCIRQ 58

Query: 252 LGE-----GATCKIY---SKELGETPSAVCKEPL--KCIKRVC 350
           +GE     G  C  +    +E     S+ CKE +   C+K +C
Sbjct: 59  IGETCDGPGLVCDSHLSCHQENDLDGSSRCKERMHDDCLKAIC 101


>Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1058.6 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 240 CVTLLGEGATCKIYSKELGETPSAVCKE 323
           CV   G+G+T  ++S  +G+  SA+C E
Sbjct: 137 CVWGQGDGSTMPVFSTSVGKIGSAICWE 164


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
           protein F48E3.8a protein.
          Length = 2427

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +3

Query: 99  VASAAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKI 278
           V     GAL  GT     +  IQ  + CP    +  R AG       C+T+   G  C+ 
Sbjct: 58  VCQCVKGALNTGTTCIASSTAIQTSVACPAGQTY-IREAG------VCMTVQQPGEPCQ- 109

Query: 279 YSKELGE-TPSAVC-KEPLKCI 338
           YS++     P A C K   +C+
Sbjct: 110 YSQQCSALEPGAYCLKMRCECV 131


>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
           protein F48E3.8b protein.
          Length = 1299

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +3

Query: 99  VASAAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEGATCKI 278
           V     GAL  GT     +  IQ  + CP    +  R AG       C+T+   G  C+ 
Sbjct: 58  VCQCVKGALNTGTTCIASSTAIQTSVACPAGQTY-IREAG------VCMTVQQPGEPCQ- 109

Query: 279 YSKELGE-TPSAVC-KEPLKCI 338
           YS++     P A C K   +C+
Sbjct: 110 YSQQCSALEPGAYCLKMRCECV 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,445,878
Number of Sequences: 27780
Number of extensions: 310599
Number of successful extensions: 857
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)