Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b13r
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   248   2e-66
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   140   7e-34
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    28   4.4  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  248 bits (608), Expect = 2e-66
 Identities = 117/163 (71%), Positives = 135/163 (82%)
 Frame = -2

Query: 549 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 370
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 369 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRXVIDHIQVNRAP 190
           +GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD  VI+HI V RA 
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 189 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 61
            LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++  PTDDA
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 166


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  140 bits (339), Expect = 7e-34
 Identities = 85/163 (52%), Positives = 100/163 (61%)
 Frame = -2

Query: 549 YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 370
           YSR P+N  KSCKARGS+LRVHFKNT+E A     M LR               +P RR 
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRA 46

Query: 369 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRXVIDHIQVNRAP 190
              +    + K+    +           L LL+NAESNA+ K LDVD  VI+HI V RA 
Sbjct: 47  QAFLNHVKEHKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 97

Query: 189 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 61
            LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++  PTDDA
Sbjct: 98  KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 138


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 364 AVEATEWNTLFLFN--HVFEVTNSTTERHLSDCHCGLICVLKVN 489
           AV A  W  L +F+  + FE+ NS +    S CHC  +C   +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 18  FDAQAFSWKAFSSLGHHQ*GLP*RQHLRVR*DILRCGRETTCRG 149
           F + A+  +A ++L  H+  L    HL  + D+LRC R T+C G
Sbjct: 344 FGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +3

Query: 123 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LXCQRPKFCC 251
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
 Frame = -2

Query: 312 WPKKSAEFLLQLLRNAESNADNKTLDVDRXVIDHI-QVNRAPCLRR-----RTYRAHGRI 151
           W K+    +  LL  AE++    + D+D+ V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 150 NPYMSSPCHIEVCLSER 100
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,535,146
Number of Sequences: 27780
Number of extensions: 277265
Number of successful extensions: 724
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)