Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b12r
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    29   0.47 
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   4.4  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   4.4  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    25   5.8  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.7  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    25   7.7  

>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 267 LLDLASSCWVANFDKSPYKSRINLCHNTINKHNFDYF 377
           L  L  + W   FD SP    +++ H + N HNF  F
Sbjct: 119 LKPLLDTAWEI-FDSSPSLKTLSMLHKSFNLHNFQSF 154


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 352 MVLWHKLIRDL*GDLSKLATQHDEAKSNN 266
           M L+ K ++D+  + +KLA  H E  SN+
Sbjct: 1   MELYQKHLKDVYANFNKLAAVHGETTSNS 29


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 294 VANFDKSPYKSRINLCHNTINKHNFDYFLKLYFFRRVIKN 413
           V N  +S  K   N C  TI++H      +L   +R+IKN
Sbjct: 564 VLNTTESAIKILANFCEPTIHEHLETALQELERSKRIIKN 603


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 315 PYKSRINLCHNTIN-KHNFDYFLKLYFFRRV 404
           P +S + +  +T+   +NFD+F K+  FR++
Sbjct: 282 PRRSLVTMFPHTLTGDYNFDFFKKVVSFRKI 312


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 117 TGYTKTIIVIILCVGASSHSNRGYHIL 197
           TGYT  + + ++CV ++     GY  L
Sbjct: 31  TGYTVWVFIALICVDSNIKIRNGYRNL 57


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 330 INLCHNTINKHNFDYFLKLYFFR 398
           +N+  NT  +  +DYFLK  F R
Sbjct: 86  VNILRNTETRKRYDYFLKNGFPR 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,715
Number of Sequences: 5004
Number of extensions: 32232
Number of successful extensions: 48
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)