Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b12r
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99271-1|CAB16471.1|  663|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine rec...    29   2.2  
AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical ...    29   2.2  

>Z99271-1|CAB16471.1|  663|Caenorhabditis elegans Hypothetical
           protein Y43F4A.1a protein.
          Length = 663

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 270 LDLASSCWV-ANFDKSPYKSRINLCHNTINKHNFDY 374
           L  A+ C   A+FD+ P    +NLC + ++ HN DY
Sbjct: 203 LSYAAHCQQEADFDR-PIAGNVNLCPSALSVHNHDY 237


>U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine
           receptor, class w protein71 protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 57  FFFYDQHDIITVSFKKNYVHTGYTKTIIVIILCVGASSHS 176
           FF+     +++ S   NYV  GY    I    C+ A+SHS
Sbjct: 278 FFYLSSFILVSASSYLNYV-IGYGSVFISFFYCIVATSHS 316


>AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical
           protein Y119C1B.5 protein.
          Length = 754

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +3

Query: 114 HTGYTKTIIVIILCV--GASSHSNRGYHILQFS**HL*LSDNVKNTVSIVQMLLLDLASS 287
           H+GYT+ + V+ILC+  G          IL     ++ +S  +++   I++++LL+L SS
Sbjct: 379 HSGYTEAVSVVILCIQTGFLGMQVEQKTILLALVLYIVISALLQSLFEIIEVVLLNLPSS 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,560,744
Number of Sequences: 27780
Number of extensions: 179707
Number of successful extensions: 374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)