Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b11r
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.96 
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    27   2.9  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   3.9  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   3.9  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   9.0  

>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 329 HICIMTKYLCFFI-YCFFR--VSVFIYFAVIFVLNV*FPVLRNDDVN 460
           +  I TK+  F I  CFF   ++  I   VIF+L + FPV+ N + N
Sbjct: 386 YFTIKTKFGVFRIPRCFFNSTIATLITIIVIFILLLSFPVIDNREQN 432


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 385 NAKKTVDKEAQIFCHN-TNMAVKYDNNNLQMLDKDSC 278
           N   T+D EAQ F HN +  +V +DN+N     + +C
Sbjct: 59  NPDPTMDLEAQTFNHNESTTSVGHDNSNSPPKCRKTC 95


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 418 YENDCKINKNRNAKKTVDKEAQIFCHNTNMAVKYDNNNLQMLD 290
           YEN CK+ K   ++ ++++    F  N N    YD+N     D
Sbjct: 804 YEN-CKLGKLNLSETSINERVMGFSTNINETDNYDDNETTQSD 845


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 214 TRLCYENDSSHGKGVKMAKRLDSYLYP 294
           +RLCY  DS H   V++ +++ S +YP
Sbjct: 23  SRLCYGLDSDHVDPVEITQKVISGVYP 49


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 326 RHICIMTKYLCFFIYCFFRVSVFIYFAVIFVLNV 427
           RH       L  F YC F +  F  FA + + ++
Sbjct: 319 RHFSFGIVVLAIFSYCNFGIKQFFLFAAVMIYDL 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,874
Number of Sequences: 5004
Number of extensions: 56611
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)