Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b11f
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 35 0.012
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 33 0.028
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 1.1
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 2.5
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 2.5
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.3
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 3.3
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 4.3
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 5.7
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 5.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 7.5
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 7.5
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 7.5
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 7.5
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 25 7.5
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 7.5
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 7.5
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 7.5
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 7.5
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 7.5
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 9.9
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 25 9.9
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 9.9
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 34.7 bits (76), Expect = 0.012
Identities = 36/143 (25%), Positives = 64/143 (44%)
Frame = +2
Query: 8 ALSIQSQSDRVAECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTS 187
A+ I S++D V ++ SPS K+ +A S + ++ D P+ +T S L+ F+T
Sbjct: 9 AIVIDSEAD-VDISSSQASPS--KVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTP 65
Query: 188 CLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAE 367
+ + + VLPS D +KS+ D + +S + T T NP +++
Sbjct: 66 LV----SGSEDVLPSPRDALNITNKKSVTDNLLLSLTSSNQSTNT-NLNPSSRVEIINLN 120
Query: 368 KAHQNLLDGVEHFDKTQMKHTTT 436
+ N L + + HT T
Sbjct: 121 SSPPNSLSSQPKHQEFHLFHTPT 143
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 33.5 bits (73), Expect = 0.028
Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 1/94 (1%)
Frame = +1
Query: 301 PAEAHRDSGEEPASGQRCCRSGES-PPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 477
P H + GE GE PP P+ H + + P +
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 333
Query: 478 GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 579
GE P +H EL H H E+ HKG
Sbjct: 334 GEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = +2
Query: 134 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 292
L K +TDL +Q E FN C + D + +V A E V E+ + DG+E
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487
Query: 293 DSSQ 304
SSQ
Sbjct: 488 SSSQ 491
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +2
Query: 236 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKT 415
EDV E+ + + E D + ++ E + +N P+ + + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307
Query: 416 QM 421
+
Sbjct: 308 NL 309
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 460 DRSYRSGEGKEQIPERHRELRSH*AE----AHGNVREEPAPHKG 579
D S R G +IP+RHR+ R + G RE+P H G
Sbjct: 2 DLSSRLSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYG 45
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 252 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 121
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 3.3
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +2
Query: 119 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----E 286
P K L K+ +L+S L+ SCL+D T+ K ++ +EKTQ+ +FD + +
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEK 66
Query: 287 KFDSSQLKHTETQEK 331
KF +S + +T EK
Sbjct: 67 KFHTSLNRFGKTLEK 81
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +2
Query: 203 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 382
D EK V S + E+ QK++ D E+ D + T T K+ + EK HQ
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187
Query: 383 LLDGVEHFDKT 415
++GV++ KT
Sbjct: 188 AVEGVQNSKKT 198
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +2
Query: 218 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 346
+ L S ED+ + T+ S+ + + +++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 259 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 155
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 421 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 516
++HD G S + DR + K++ +HRE
Sbjct: 720 QSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 448 ILFFRRRVLHLSLVEVFNSVQEVL 377
I++ + + LHL LV +FN E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 261 WVFSVATSSADGSTIFSLVSTSRRQL 184
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 261 WVFSVATSSADGSTIFSLVSTSRRQL 184
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 224 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 319
LP +ED+ + SL D + D+SQL E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 261 WVFSVATSSADGSTIFSLVSTSRRQL 184
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 30 PTESLSARIFYPLPHQKYIDSQWPAP*VTLP 122
P +SA F P+P+ Y D+ + A V P
Sbjct: 144 PNMYVSANTFIPMPYAHYTDNMYHAKPVNRP 174
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 260 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 346
Q + G + DSS +K T +E PLP+
Sbjct: 3 QTAALHGPKPMDSSHIKVTNVKELKPLPE 31
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 261 WVFSVATSSADGSTIFSLVSTSRRQL 184
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 264 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 166
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +2
Query: 41 AECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 220
A+ L +SS +Y +++ + ++ + K A ++ TS D +N K
Sbjct: 727 ADMMMLQEGASSMVY-YSLTNLDNPGATVNEAAKTAATIEQNEHEIQTSV--DPISNVKA 783
Query: 221 VLPSAEDVATEKT 259
+LP+A+DV+++ +
Sbjct: 784 ILPNADDVSSKNS 796
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 113 DTPSLKDLPKVATDLKSQL--EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE 286
D P+ D+ V T+L++ + + + R + +E + T + + + + I+
Sbjct: 2 DDPNSYDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIK 61
Query: 287 KFDSSQLKHTETQEKNPL 340
K DSSQ+ + K+PL
Sbjct: 62 KVDSSQILNDNGSHKSPL 79
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +2
Query: 200 VDTNEKIVLPSA--EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKA 373
+ T KI + S E+++ K + + Q HTE Q P++ V E
Sbjct: 391 MSTPPKIEIESKIEEEISVVSKSKEISSSVSSVGKEQ-NHTEKQVAIETPEQQKVEKEDE 449
Query: 374 HQNL 385
H NL
Sbjct: 450 HLNL 453
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,536
Number of Sequences: 5004
Number of extensions: 51792
Number of successful extensions: 200
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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