Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b11f
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0057 + 22410167-22411330 33 0.27
10_01_0090 + 1110035-1110350,1111032-1111039 31 0.84
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 31 1.1
06_02_0203 + 12986685-12988691 30 1.5
03_02_1016 + 13228113-13228964 30 1.5
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 1.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 2.6
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 29 2.6
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 29 2.6
01_06_0241 - 27813076-27813622,27813695-27814125 29 2.6
09_04_0329 + 16726501-16726750,16726843-16726930,16727280-167273... 29 3.4
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 3.4
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775... 29 3.4
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 29 3.4
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654... 29 3.4
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 3.4
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 28 5.9
02_03_0131 - 15576422-15577021 28 5.9
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 28 5.9
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 7.8
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 7.8
>04_04_0057 + 22410167-22411330
Length = 387
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/70 (25%), Positives = 26/70 (37%)
Frame = +1
Query: 301 PAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 480
P A + P RC S PP P + + D++ +D RKE RS
Sbjct: 187 PPPAAAAASPSPERSPRCQPSPPPPPPPHALVIPVEDEEDDSDEDDRKEEAVELEMLRSE 246
Query: 481 EGKEQIPERH 510
++P H
Sbjct: 247 RRAARLPRSH 256
>10_01_0090 + 1110035-1110350,1111032-1111039
Length = 107
Score = 31.1 bits (67), Expect = 0.84
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = +1
Query: 382 PLGRS*TLRQDSDEAHDDG----RKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGN 549
PL R + D D A +DG R+ A R R EG+ RHR + + G+
Sbjct: 8 PLDRVSDVASDHDGADEDGLAAQRRRRVADGRRLRRREGRHGHLLRHRHQQVRHRDPTGD 67
Query: 550 VREEPAPHKGRH*ARE 597
E +P R ARE
Sbjct: 68 GHESSSPAAARTAARE 83
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Frame = +1
Query: 298 EPAEAHRDSGEEPASGQRCCRSGESPPEPLGR----S*TLRQDSDEAHDDGRKESTAPDR 465
E R G G+R ESPP P + S +DS E D +E+ P
Sbjct: 60 EEESRSRRHGHHRDGGRRSLSPSESPPPPAAKRERSSSRAPRDSVERRDSADREAPPPSS 119
Query: 466 SYRSGE---GKEQIPERHRELRS 525
R G G E PE + R+
Sbjct: 120 RKRKGHEGGGNESDPEGGKRARA 142
>06_02_0203 + 12986685-12988691
Length = 668
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 335 PLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 436
P+P+ + +AA++AH N G EH K + TTT
Sbjct: 505 PVPNSNAIAADEAHGNATAG-EHDKKETAEQTTT 537
>03_02_1016 + 13228113-13228964
Length = 283
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 298 EPAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHD 432
E A AH +G + A+ +R C SG P P RS T HD
Sbjct: 214 EAARAHASNGGKHAAARR-CSSGNHQPVPRARSTTGMDSLGHGHD 257
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 152 DLKSQLEGFNTSCLRDVDTNEKIVL 226
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +3
Query: 30 PTESLSARIFYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTP 209
P SL R+ P P I +++PAP PP ++S R+P SSK P P
Sbjct: 641 PPPSLPNRLVPP-PPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPP 699
Query: 210 MKR 218
R
Sbjct: 700 ANR 702
>06_03_0723 + 23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 29.5 bits (63), Expect = 2.6
Identities = 28/92 (30%), Positives = 38/92 (41%)
Frame = +1
Query: 301 PAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 480
P E ++DS + S + ESP S + S +HDD R+ T PD S R+G
Sbjct: 1312 PGEPYQDSNKTDPSTP--VPTSESPIRDKAGSGLFKTIS--SHDDCREPLT-PDSSCRAG 1366
Query: 481 EGKEQIPERHRELRSH*AEAHGNVREEPAPHK 576
E P + +R H E P P K
Sbjct: 1367 SPLESPPRASKRIRVSSDIDHRGNNEFPPPLK 1398
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 287 KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEK 445
K+D + ++ E QEK K + K ++ VE K +M HT+ ++
Sbjct: 262 KYDMKKKEYKEAQEKEKTEKKKMEEVAKIWEDSKGPVEELKKKKMSHTSNTKR 314
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 406 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRS-H*AEAHGNVREEPAPHK 576
R + + H+ ++S +RS+R+ ++ + HR RS H A + V + H+
Sbjct: 21 RVEPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78
>09_04_0329 +
16726501-16726750,16726843-16726930,16727280-16727333,
16727590-16727739,16727884-16728015,16728279-16728423,
16728514-16728552,16728638-16728712,16728935-16728994,
16729120-16729184,16729519-16729609,16729806-16729820
Length = 387
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 392 RPRGSGGLSPLRQHLCPEAGSSPESRCASAG 300
R RG+ G+ LR L P A +SP ++ A+ G
Sbjct: 54 RRRGAHGVRALRPLLLPRASASPSAKTAAGG 84
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 159 RVSSKASTPAVSVTSTPMKRLCFR 230
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>07_03_0735 +
21075033-21075846,21077065-21077199,21077384-21077517,
21077604-21077814,21078033-21078270,21078346-21078496,
21078593-21078931
Length = 673
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 215 KIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN 334
K VLPS E++A ++ S GIE+ + + + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = +1
Query: 307 EAHRDSGEEPASGQ--RCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 480
E+ +SG+EP + SG + P P + D + DD ES+ D +
Sbjct: 328 ESSEESGDEPPQKKIKDSTTSGTTKPSPKATKKEISSDDESDEDDSSDESSDEDVKQKQT 387
Query: 481 EGKE-QIPERHRELRSH*AEAHGNVREEPAPHK 576
+ K+ Q P S + + E P K
Sbjct: 388 QAKKVQAPVAQESSSSDESSEEDSDMESDEPAK 420
>03_02_0985 - 12961787-12961984,12963177-12963337,12965332-12965489,
12966015-12966105,12966715-12966752,12966994-12967154,
12967249-12968687,12968815-12969227,12969630-12970987,
12971089-12971454,12971533-12971696,12971748-12971820,
12972967-12973113
Length = 1588
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 203 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQ-EKNPLPDKDVVAAEKAHQ 379
D EK + +DVA + K GIE D S K T + E N L D + ++
Sbjct: 927 DILEKTKRINDDDVAFHEKMKEHRAGIETLDLSGKKKTVKEWEDNRLSSMDHTSKGGDNE 986
Query: 380 NLLDGVEHFDKTQMKHTTTEEKNPL 454
NL + + K++ + ++ N L
Sbjct: 987 NLNERLSKIKKSEARPEEVQDANAL 1011
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 114 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 206
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 373 PPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 507
PP P GR RQ + DG+ + D S RS +G P++
Sbjct: 89 PPPPRGRRRVTRQFWNAGDYDGKPDLLGGDPSLRSDDGGGMDPDK 133
>02_03_0131 - 15576422-15577021
Length = 199
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Frame = +1
Query: 406 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNV---REEPAPHK 576
R D D R DR R GE + RSH +H + R P+P
Sbjct: 34 RDHRDRDRDKERDRDRDRDRERRRGERDRKRSRSPSADRSHRRHSHSHSHRGRSSPSPDA 93
Query: 577 GRH 585
GRH
Sbjct: 94 GRH 96
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -3
Query: 344 PEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWRRLQQTEAQSFHWCRRHGDS 186
P++ SSP AS+ S R R ++SGS + + + H + G S
Sbjct: 33 PDSASSPSPSSASSPSRSPDRRSRSRSSGSKRRKASSSSRRHRHHHHKSSGRS 85
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 128 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 220
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 128 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 220
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,427,970
Number of Sequences: 37544
Number of extensions: 393946
Number of successful extensions: 1427
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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