Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b11f
(673 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 104 7e-23
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 38 0.006
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 36 0.030
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21) 34 0.091
SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6) 33 0.21
SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1) 33 0.28
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 32 0.48
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.64
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 31 0.84
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 25 1.4
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05) 30 1.5
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 2.0
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 30 2.0
SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087) 30 2.0
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 29 2.6
SB_54391| Best HMM Match : MarR (HMM E-Value=0.95) 29 3.4
SB_48646| Best HMM Match : Sulfotransfer_1 (HMM E-Value=8.5) 29 3.4
SB_2942| Best HMM Match : Peptidase_M10_N (HMM E-Value=0.69) 29 3.4
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 29 3.4
SB_49258| Best HMM Match : Herpes_UL6 (HMM E-Value=0.18) 29 4.5
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4) 29 4.5
SB_31755| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05) 29 4.5
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 29 4.5
SB_29507| Best HMM Match : E-MAP-115 (HMM E-Value=5.1) 28 6.0
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 28 6.0
SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41) 28 7.9
SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3) 28 7.9
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 104 bits (249), Expect = 7e-23
Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
Frame = +2
Query: 134 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKH 313
+PK D +S++ F+ + L+ V T EK ++PS ED+ E ++ FD S+LKH
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKH 653
Query: 314 TETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXX 487
ET EKNPLP V+ E + L D V FD +++KH +EKNPL
Sbjct: 654 VETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTEST 713
Query: 488 XNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 604
+ ++ FD +KLKH +T EKNPLP I QEK++
Sbjct: 714 ETRA--EVKTFDHSKLKHVQTEEKNPLPDAKTIAQEKAS 750
Score = 99 bits (238), Expect = 2e-21
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Frame = +2
Query: 158 KSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNP 337
+++++ F S L+ V+T EK LP+ + +A EK + + F G+E F ++LKH ET EKNP
Sbjct: 451 RAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNP 509
Query: 338 LPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKFLNGI 511
LPD + AE + L D V FD +++KH T+EK + ++ +
Sbjct: 510 LPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSR--AEV 567
Query: 512 ENFDPTKLKHTETCEKNPLPTKDVIEQE 595
++FD +KLKH T EKNPLPT + +E
Sbjct: 568 KSFDHSKLKHVVTQEKNPLPTPQTLHEE 595
Score = 91.1 bits (216), Expect = 7e-19
Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Frame = +2
Query: 146 ATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTE 319
A D +++++ F+ S L+ V T EK LP+ + + E K+ D E FD ++LKH
Sbjct: 560 AIDSRAEVKSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVT 619
Query: 320 TQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKF 499
TQEK+ +P ++ + E V+ FD +++KH T EKNPL
Sbjct: 620 TQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVL 677
Query: 500 --LNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 601
++ + +FD +KLKH E EKNPLPTKD I E +
Sbjct: 678 PDVSAVASFDASKLKHVEVQEKNPLPTKDDITTEST 713
Score = 80.6 bits (190), Expect = 1e-15
Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Frame = +2
Query: 203 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 382
DT ++I P +E + K + KFD++ LKH +T+EKN LP + + E
Sbjct: 389 DTPQQI-WPGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDE 447
Query: 383 LLD--GVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKFLNGIENFDPTKLKHTETCE 556
D V+ F+K++++H T+EKN L F +G+E F KLKH ET E
Sbjct: 448 FPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEKRTAPF-SGVEVFQKNKLKHVETLE 506
Query: 557 KNPLPTKDVIEQE 595
KNPLP I E
Sbjct: 507 KNPLPDAQNIRAE 519
Score = 55.2 bits (127), Expect = 5e-08
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +2
Query: 341 PDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKFLNGIE-- 514
P +V + + + V FD +KH T+EKN L ++F + E
Sbjct: 396 PGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVK 455
Query: 515 NFDPTKLKHTETCEKNPLPTKDVIEQEK 598
+F+ +KL+H ET EKN LPTKD I EK
Sbjct: 456 SFEKSKLQHVETKEKNTLPTKDTIADEK 483
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 38.3 bits (85), Expect = 0.006
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 24/150 (16%)
Frame = +2
Query: 227 PSAEDV--ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDVVAAE 367
PS+E A T L DG++ F ++ +H + T E++P DK A
Sbjct: 169 PSSEKSYQALRDTTHDLLDGLQHFGQAKEEHAKLIPKYHEIMIKTIEQDPTSDKSYKALR 228
Query: 368 KAHQNLLDGVEHFDKTQMKHTT-----------TEEKNPLXXXXXXXXXXXXNKFLNGIE 514
+LLDG+ + D+ + +H T E++P + L+G+
Sbjct: 229 DTTHDLLDGLRYSDQAKEEHAKLIPKYHEIMIKTIEQDPTSDKSYKALRDTTHDLLDGLR 288
Query: 515 NFDPTKLKHTETCEKNPLPTKDVIEQEKSA 604
+FD K +H + K IEQ+ ++
Sbjct: 289 DFDQAKEEHAKLIPKYHKIMIKTIEQDPTS 318
Score = 33.5 bits (73), Expect = 0.16
Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 24/150 (16%)
Frame = +2
Query: 227 PSAEDV--ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDVVAAE 367
PS+E A T L DG+ D ++ +H + T E++P +K A
Sbjct: 120 PSSEKSYQALRDTTHDLLDGLRYSDQAKEEHAKLIPKYHEIMIKTIEQDPSSEKSYQALR 179
Query: 368 KAHQNLLDGVEHFDKTQMKHT-----------TTEEKNPLXXXXXXXXXXXXNKFLNGIE 514
+LLDG++HF + + +H T E++P + L+G+
Sbjct: 180 DTTHDLLDGLQHFGQAKEEHAKLIPKYHEIMIKTIEQDPTSDKSYKALRDTTHDLLDGLR 239
Query: 515 NFDPTKLKHTETCEKNPLPTKDVIEQEKSA 604
D K +H + K IEQ+ ++
Sbjct: 240 YSDQAKEEHAKLIPKYHEIMIKTIEQDPTS 269
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 35.9 bits (79), Expect = 0.030
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 122 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFD 277
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFE 385
>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
Length = 900
Score = 34.3 bits (75), Expect = 0.091
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +2
Query: 197 DVDTNEKIVLPSAEDVATEKTQKSLFDG-IEKFDSSQLKHTETQEKNPLPDKDVVAAEKA 373
DV + P+ A EKT K + DG +EK+ + +T + L D DV E+
Sbjct: 341 DVIGKPPAIPPAQVQAAEEKTPKDIIDGLLEKYKEIGSQMADTSADDGLDDDDV---EEE 397
Query: 374 HQNLLDGVEHFDKTQMK 424
++LD + F T+ K
Sbjct: 398 DDDVLDEADRFRDTKRK 414
>SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6)
Length = 692
Score = 33.1 bits (72), Expect = 0.21
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 24/149 (16%)
Frame = +2
Query: 227 PSAEDV--ATEKTQKSLFDGIEKFDSSQLKHT-----------ETQEKNPLPDKDVVAAE 367
PS+E A T L DG+ FD ++ +H +T +++P +K A
Sbjct: 543 PSSEKSYQALRDTTHDLLDGLRYFDQAKEEHAKLIPKYHEIMIKTIKQDPSSEKSYQALR 602
Query: 368 KAHQNLLDGVEHFDKTQMKHT-----------TTEEKNPLXXXXXXXXXXXXNKFLNGIE 514
+LLDG+ F + + +H T E++P + L+G+
Sbjct: 603 DTTHDLLDGLRDFGQAKEEHAKLIPKYHEIMIKTIEQDPTSDKSYQALRDTTHDLLDGLR 662
Query: 515 NFDPTKLKHTETCEKNPLPTKDVIEQEKS 601
F+ K +H + K IEQ+ S
Sbjct: 663 YFEQAKEEHAKLIPKYHEIMIKTIEQDPS 691
Score = 31.5 bits (68), Expect = 0.64
Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Frame = +2
Query: 317 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT-----------TTEEKNPLXXX 463
+T E++P +K A +LLDG+ +FD+ + +H T +++P
Sbjct: 537 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQAKEEHAKLIPKYHEIMIKTIKQDPSSEK 596
Query: 464 XXXXXXXXXNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 604
+ L+G+ +F K +H + K IEQ+ ++
Sbjct: 597 SYQALRDTTHDLLDGLRDFGQAKEEHAKLIPKYHEIMIKTIEQDPTS 643
>SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)
Length = 766
Score = 32.7 bits (71), Expect = 0.28
Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 23/142 (16%)
Frame = +2
Query: 245 ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDVVAAEKAHQNLLD 391
A T L DG+ F ++ +H + E++P +K A +LLD
Sbjct: 135 ALRDTTHDLVDGLRYFGQAEEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLLD 194
Query: 392 GVEHFDKTQMKHT-----------TTEEKNPLXXXXXXXXXXXXNKFLNGIENFDPTKLK 538
G+ +FD+ + +H E++P + L+G+ FD K +
Sbjct: 195 GLRYFDQAKEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEE 254
Query: 539 HTETCEK-NPLPTKDVIEQEKS 601
H + K + + K++ + KS
Sbjct: 255 HAKLIPKYHEIMIKNIEQDPKS 276
Score = 31.9 bits (69), Expect = 0.48
Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 23/142 (16%)
Frame = +2
Query: 245 ATEKTQKSLFDGIEKFDSSQLKHT-----------ETQEKNPLPDKDVVAAEKAHQNLLD 391
A T L DG+ FD ++ +H + E++P +K A +L+D
Sbjct: 86 ALRDTTHDLLDGLRYFDQAKEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLVD 145
Query: 392 GVEHFDKTQMKHT-----------TTEEKNPLXXXXXXXXXXXXNKFLNGIENFDPTKLK 538
G+ +F + + +H E++P + L+G+ FD K +
Sbjct: 146 GLRYFGQAEEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEE 205
Query: 539 HTETCEK-NPLPTKDVIEQEKS 601
H + K + + K++ + KS
Sbjct: 206 HAKLIPKYHEIMIKNIEQDPKS 227
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Frame = +2
Query: 245 ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDVVAAEKAHQNLLD 391
A T L DG+ F ++ +H + E++P +K A +LLD
Sbjct: 37 ALRDTTHDLVDGLRYFGQAEEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLLD 96
Query: 392 GVEHFDKTQMKH 427
G+ +FD+ + +H
Sbjct: 97 GLRYFDQAKEEH 108
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Frame = +2
Query: 245 ATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDKDVVAAEKAHQNLLD 391
A T L DG+ F ++ +H + E++P +K A +LLD
Sbjct: 282 ALRDTTHDLVDGLRYFGQAEEEHAKLIPKYHEIMIKNIEQDPKSEKSYQALRDTTHDLLD 341
Query: 392 GVEHFDKTQMKH 427
G+ +FD+ + +H
Sbjct: 342 GLRYFDQAKEEH 353
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = +2
Query: 125 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQ 304
L DL +V +LKS+ EG CL D++ + DV E I + + +
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKEHENLKSAVSISEGELLK 1183
Query: 305 LKHTETQEKNPLPDK 349
K+T EK K
Sbjct: 1184 FKNTLQSEKEEFEKK 1198
>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1940
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Frame = +2
Query: 191 LRDVDTNEKIVLPSAEDV---ATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVA 361
+ D+ NE+ + P ED+ ++ ++L DG++K K ++ Q + L D ++++
Sbjct: 663 VEDISENEEDIDPGKEDIDYDGDDEVNRAL-DGLQKSTFHYNKTSDKQAISSLKDPNLIS 721
Query: 362 AEKAHQNLLDGV 397
+ A ++L+D V
Sbjct: 722 SITAAKDLMDNV 733
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 233 AEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLL 388
++D EKT+ S+ + + DSS T+EK +KD E+ ++L+
Sbjct: 1546 SDDGTDEKTEDSMQEDAKDLDSSNTASDTTKEKGKNKEKDKTVLERWEESLM 1597
>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 11/128 (8%)
Frame = +2
Query: 254 KTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT- 430
K ++ L I K+ +K T E++P +K A +LLDG+ +FD+ +H
Sbjct: 549 KGKEELAKLIPKYHEIMIK---TIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEHAK 605
Query: 431 ----------TTEEKNPLXXXXXXXXXXXXNKFLNGIENFDPTKLKHTETCEKNPLPTKD 580
E++P +G+ +FD K +H + K
Sbjct: 606 LIPKYHEILIKKIEQDPSSEKRYQALRDTTYNLFDGLRDFDHAKEEHAKLIPKYHEIMIK 665
Query: 581 VIEQEKSA 604
IEQ+ ++
Sbjct: 666 TIEQDPTS 673
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Frame = +2
Query: 227 PSAEDV--ATEKTQKSLFDGIEKFDSSQLKHT-----------ETQEKNPLPDKDVVAAE 367
PS+E A T L DG+ FD + +H + E++P +K A
Sbjct: 573 PSSEKSYQALRDTTHDLLDGLRYFDQASKEHAKLIPKYHEILIKKIEQDPSSEKRYQALR 632
Query: 368 KAHQNLLDGVEHFDKTQMKH 427
NL DG+ FD + +H
Sbjct: 633 DTTYNLFDGLRDFDHAKEEH 652
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 24.6 bits (51), Expect(2) = 1.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 412 DSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHREL 519
DSD+ +DD +STA R R + + P R L
Sbjct: 281 DSDDDYDDREGDSTAKIRKGRRSDTDDLSPNPRRLL 316
Score = 24.2 bits (50), Expect(2) = 1.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1
Query: 295 FEPAEAHRDSGEE 333
FEP E H DSG+E
Sbjct: 266 FEPMEIHDDSGDE 278
>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
Length = 385
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = -1
Query: 259 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGEVFQGGS 116
GLL+GD+F R K N+ I VD T G + FEL + + E+ GS
Sbjct: 74 GLLAGDIFRRPKANILISVDGV-TKG-DKFELPAKASFPVQEMAGLGS 119
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 104 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 250
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
Length = 385
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 224 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLP 343
L S D EKT D +E+F S +H T +KNPLP
Sbjct: 194 LSSRSDHVQEKT-----DRLEQFSSQTGRHINTTKKNPLP 228
>SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = -1
Query: 259 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFEL 164
GLL+GD+F R K N+ I VD T G + FEL
Sbjct: 51 GLLAGDIFRRPKANILISVDGV-TKG-DKFEL 80
>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
Length = 556
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 254 KTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 427
K ++ L I K+ +K T E++P +K A +LLDG+ +FD+ +H
Sbjct: 474 KGKEELAKLIPKYHEIMIK---TIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 528
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 445 ESTAPDRSYRSGEGKEQIPERHR 513
+STA D SY SG G E P HR
Sbjct: 483 DSTASDSSYDSGSGPELSPNEHR 505
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 52 ESSIPFLIKNILIHNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 186
E S+PF N N ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_54391| Best HMM Match : MarR (HMM E-Value=0.95)
Length = 837
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Frame = +2
Query: 326 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT-----------TTEEKNPLXXXXXX 472
E++P +K A +LLDG+ +FD+ +H E++P
Sbjct: 308 EQDPSSEKSYQALRDTTHDLLDGLRYFDQAWKEHAKLIPKYHEIMIKNIEQDPSSEKSCK 367
Query: 473 XXXXXXNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 604
+ L+G+ +F +K +H + K IEQ+ ++
Sbjct: 368 ALRHTTHDLLDGLRDFGQSKEEHAKLIPKYHEIMIKTIEQDPTS 411
>SB_48646| Best HMM Match : Sulfotransfer_1 (HMM E-Value=8.5)
Length = 674
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +2
Query: 197 DVDTNEKIVLPSAEDVATEK-----TQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVA 361
D+ ++VLP+ +DV K + GI + DSS + + + +PD ++
Sbjct: 341 DLAQQLQVVLPNVKDVTFTPFCWKFAYKFEYTGITESDSS-MSLARVRRTSSVPDSLQLS 399
Query: 362 AEKAHQNLLDGVEHFDKTQMKHTTTE 439
AE ++ V+H +K + TT +
Sbjct: 400 AELLSVGSVESVDHREKYPLNKTTAD 425
>SB_2942| Best HMM Match : Peptidase_M10_N (HMM E-Value=0.69)
Length = 123
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -3
Query: 392 RPRGSGGLSPLRQHLCPEAGSSPESRCASAGSNQTSRYRR-IKTSGSSQWRRLQQT 228
RP GG E S S+CA + S SR RR + + QW R ++T
Sbjct: 66 RPTLDGGRRTSHTTSSSETISPSRSKCACSNSRSASRPRRHLDFTSQEQWTRKRRT 121
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/71 (16%), Positives = 34/71 (47%)
Frame = +1
Query: 316 RDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 495
++ G+ + ++ R E P + L + ++ D+ + +E PD+ + +++
Sbjct: 829 QEQGKPDKNKEKQDREQEKPDKDLEKQYQKQEKPDKGQEKQDREQEKPDKDQEKQDREQE 888
Query: 496 IPERHRELRSH 528
P++ +E + H
Sbjct: 889 KPDKDQEKQDH 899
>SB_49258| Best HMM Match : Herpes_UL6 (HMM E-Value=0.18)
Length = 899
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Frame = +2
Query: 326 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT-----------TTEEKNPLXXXXXX 472
E++P +K A +LLDG+ +FD+ +H E++P
Sbjct: 186 EQDPSSEKSYQALRDTTHDLLDGMRYFDQAWKEHAKLIPKYHEIMIKNIEQDPSSEKSYQ 245
Query: 473 XXXXXXNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 604
+ L+G+ +F K +H + K IEQ+ ++
Sbjct: 246 ALRHTTHYLLDGLRDFGQAKEEHAKLIPKYHEIMIKTIEQDPTS 289
>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
Length = 426
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/72 (27%), Positives = 27/72 (37%)
Frame = +1
Query: 301 PAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 480
P+ RDS E S + + SPP S S + DD R R R
Sbjct: 51 PSSLGRDSSERRPSARVSSDNSRSPPHRRDSSRRSHSPSRRSSDD-RSTDARDRRDRRRS 109
Query: 481 EGKEQIPERHRE 516
+E+ P R R+
Sbjct: 110 SSRERRPPRDRD 121
>SB_31755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Frame = +2
Query: 326 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHT-----------TTEEKNPLXXXXXX 472
E++P +K A +LLDG+ +FD+ +H E++P
Sbjct: 189 EQDPSSEKSYQALRDTTHDLLDGMRYFDQAWKEHAKLIPKYHEIMIKNIEQDPSSEKSCK 248
Query: 473 XXXXXXNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 604
+ L+G+ +F K +H + K IEQ+ ++
Sbjct: 249 ALRHTTHDLLDGLRDFGQAKEEHAKLIPKYHEIMIKTIEQDPTS 292
>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
Length = 492
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 254 SQWRRLQQTEAQSFHWCRRHGDSWC*SLRADSSGLWRPW 138
S WRRLQ+ A S + + D +L A+ G W PW
Sbjct: 419 SLWRRLQELNATSLEYRLQPEDPRSIAL-AERLGRWEPW 456
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -1
Query: 499 EFVLFLLRFDSFDRGQWILFFRRRVLHLSLVEVFNSVQEVL 377
+FVL++LRF +D I ++ + HL+LVE + +Q+ L
Sbjct: 295 DFVLYMLRFSDYD----IYTGKKSIAHLTLVEFESWLQDEL 331
>SB_29507| Best HMM Match : E-MAP-115 (HMM E-Value=5.1)
Length = 198
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Frame = +1
Query: 316 RDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG--EGK 489
RD+ + + C R R T +DS D ++ST + ++ +G+
Sbjct: 27 RDTRDRDEDARDCDRGTPDRDSKCDRD-TRDRDSKRDRDTHDRDSTRDEDTHEIDIPDGR 85
Query: 490 EQIPERHRELRSH*AEAHGNVREEPAPHKGRH 585
E+ E +R S A + + RE A ++GR+
Sbjct: 86 ERDHEDNRSRASSRASSRASSRERDARNRGRY 117
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 263 KSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTE 439
KS+F + + + TET+E NP D AE+ ++ +G T+ K T E
Sbjct: 276 KSVFKRNRPTEPASVPSTETKEANPNVTADTKQAEQNEGSMSEGTTSKTITENKTTNME 334
>SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +1
Query: 301 PAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 480
P + HR S + +G+R G+ PE R ++ + E + T G
Sbjct: 75 PEKQHRGSVHKRGNGER----GQGSPEKQQRGSVHKRGNGEGKSSPENQHTGSIYKRGKG 130
Query: 481 EGKEQIPERHR 513
EGK +HR
Sbjct: 131 EGKSSPENQHR 141
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 362 LRQHLCPEAGSSPESRCASAGSNQTSRYRR 273
L HL S P SRCA + S+ + RYRR
Sbjct: 446 LHCHLLVCNASDPNSRCAQSCSSFSRRYRR 475
>SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41)
Length = 533
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -3
Query: 299 SNQTSRYRRIKTSGSSQ-WR 243
+N+TS+YRRI+ GS Q WR
Sbjct: 62 TNRTSKYRRIRRRGSRQTWR 81
>SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3)
Length = 334
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +1
Query: 325 GEEPASGQRC----CRSGESPPEPLGRS*T-LRQDSDEAHDDGRK---ESTAPDRSYRSG 480
GEEP+S S + P P+ + + +D D+ +G + ES A DRS+ SG
Sbjct: 181 GEEPSSRTETPDLYILSNDIPTSPVDEAPLPVDEDDDDEQVNGLRMLPESVALDRSHESG 240
Query: 481 EGKEQIP 501
G +P
Sbjct: 241 RGTPHLP 247
>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1884
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -2
Query: 213 SLVSTSRRQLVLKPSS*LFRSVATLGRSFREGVSLTEQAIVNQYIFDEEGDRRFVHSATL 34
SLV TS KP L+ VA +GR F V+ T+ + + EEG + H L
Sbjct: 12 SLVGTSCSNSQEKPIQRLYNVVAVVGRHFTYRVTPTDGS--KNFKITEEGKKTLPHWLAL 69
Query: 33 SD 28
+
Sbjct: 70 DE 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,520,111
Number of Sequences: 59808
Number of extensions: 420459
Number of successful extensions: 1624
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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