Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b11f
(673 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 79 2e-15
Z93383-3|CAB07625.1| 309|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 28 5.3
U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical pr... 28 5.3
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 28 5.3
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 28 5.3
Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical pr... 27 9.2
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 27 9.2
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 79.4 bits (187), Expect = 2e-15
Identities = 53/144 (36%), Positives = 71/144 (49%), Gaps = 1/144 (0%)
Frame = +2
Query: 122 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDS 298
++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK IE FDS
Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDS 59
Query: 299 SQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXX 478
++L T +EK LP D + EK H L D + +F +K T T EKN L
Sbjct: 60 TKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVL----PSPT 115
Query: 479 XXXXNKFLNGIENFDPTKLKHTET 550
K L +FD + L H ET
Sbjct: 116 DVAREKTLQMAASFDKSALHHVET 139
Score = 71.7 bits (168), Expect = 4e-13
Identities = 39/100 (39%), Positives = 52/100 (52%)
Frame = +2
Query: 302 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXX 481
+LK ET EKN LP K+ VA EK H + +EHFD T++ T +EK L
Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82
Query: 482 XXXNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 601
+ + I NF LK TET EKN LP+ + +EK+
Sbjct: 83 KQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/82 (34%), Positives = 38/82 (46%)
Frame = +2
Query: 353 VVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKFLNGIENFDPTK 532
V K +Q L V + ++K T EKN L + ++ IE+FD TK
Sbjct: 4 VTELPKMNQELAGAVR--EGLELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTK 61
Query: 533 LKHTETCEKNPLPTKDVIEQEK 598
L T EK LP+ D I+QEK
Sbjct: 62 LHSTPVKEKIVLPSADDIKQEK 83
>Z93383-3|CAB07625.1| 309|Caenorhabditis elegans Hypothetical
protein F54B8.3 protein.
Length = 309
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = -1
Query: 547 FRVLQLSGIEVLDAVQEFVLFLLRFDSFDRGQWILFFRR-----RVLHLSLVEVFNSVQE 383
F V+ L+ ++V A++ F ++ DR Q I +F+R LH+ VE++NS +
Sbjct: 99 FLVIALNDLKV--ALKHVSCFAYVDNTLDRYQNITYFKRFLKSEETLHVEEVEIWNSYVD 156
Query: 382 VLVGFLRC 359
++ LRC
Sbjct: 157 DVMTILRC 164
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 29.5 bits (63), Expect = 2.3
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Frame = +3
Query: 3 PALSVFSRSPTESLSARIFY----PLPHQ-----KYIDSQWPAP*VTLPP*KTSPRSPQT 155
PAL +PT SLS+ I PL HQ K ++S+ P+ T T R+PQ
Sbjct: 60 PALPAPHPAPTTSLSSTIVRNMTAPLLHQNQKPPKNLNSR-PSTPQTSSNLNTPKRTPQV 118
Query: 156 *RVSSKASTPAVSVTSTPMKRLCFR 230
+ ++++TP VS S+ + FR
Sbjct: 119 KNLQAESTTPTVSRPSSEVDLTSFR 143
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
protein C05C9.3 protein.
Length = 1225
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = +2
Query: 230 SAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFD 409
S K + L +E S H + ++KN D ++ E Q L+G F+
Sbjct: 367 SCNSTIEHKEAEELISHLELESSQNSIHNDNRKKNEDYDMEISEIETITQRQLEGYGTFN 426
Query: 410 KTQMKH 427
+MK+
Sbjct: 427 SPEMKN 432
>U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical
protein K09H11.4 protein.
Length = 630
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/96 (21%), Positives = 40/96 (41%)
Frame = +1
Query: 298 EPAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 477
+P E +D ++ G++ R + E +S ++ +++D RK+ +R R
Sbjct: 141 DPTEV-KDRFDKEREGRKQQRGDDGEEEDHPKS---QRGIQRSNEDDRKDEEEEERPRRP 196
Query: 478 GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH 585
+ + E E R HG EEP+ + H
Sbjct: 197 HQRRGDSYEDEEEDRKKYRPRHGEEEEEPSREREHH 232
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 307 EAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 447
E + E+ + R E PEPL R D DE DDG ++
Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 57 FYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 236
F P+P + + + P TSP+SP + S++ P VSVTS P ++
Sbjct: 19 FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75
Query: 237 KTSPLRR 257
+P+++
Sbjct: 76 TVTPIQQ 82
>Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical
protein T23F11.3b protein.
Length = 366
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 344 PEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWRRL 237
P++GSS E+ + + + S R + TS SSQ+ ++
Sbjct: 76 PKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111
>Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical
protein T23F11.3a protein.
Length = 356
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 344 PEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWRRL 237
P++GSS E+ + + + S R + TS SSQ+ ++
Sbjct: 76 PKSGSSSEATSSKSSDSLVSFTRNVSTSTSSQYGKI 111
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 478 GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHY 615
G+ + Q P+ + RS + G++ P P A EI L+HY
Sbjct: 320 GQNQPQQPQYQQHPRSQSVDPSGDMNGGPRPIHQNFSASEIELHHY 365
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,865
Number of Sequences: 27780
Number of extensions: 306005
Number of successful extensions: 1207
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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