Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b10r
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    28   1.7  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    28   1.7  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    25   9.3  

>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 673 LGRELSSGCRNQTVP*IRFARELLLKTAXWCSEWTGR 783
           LG  LSSG +        FA  +   T+ W ++W GR
Sbjct: 113 LGHVLSSGQKELITSATSFAALISATTSGWLADWVGR 149


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 606 IIETSMKKIREEAKWSVENIPVIEKWLDDYVARYGVNDELL 484
           ++ +S + +RE+A W++ NI        D+V + GV + LL
Sbjct: 171 LLSSSEQDVREQAVWALGNIAGDSPMCRDHVLQCGVLEPLL 211


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 606 IIETSMKKIREEAKWSVENIPVIEKWLDDYVARYGVNDELL 484
           ++ +  K +RE+  W++ NI        DYV   GV   LL
Sbjct: 170 LLSSPEKDVREQVVWALGNIAGDSSACRDYVLGNGVLQPLL 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,063,373
Number of Sequences: 5004
Number of extensions: 61417
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)