Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b10r
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0246 + 2571524-2571689,2573127-2573169,2573310-2575308           30   2.4  
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102...    29   5.5  
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301...    29   5.5  
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730...    28   7.3  

>10_01_0246 + 2571524-2571689,2573127-2573169,2573310-2575308
          Length = 735

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = -3

Query: 654 SNLYVAHQGEFGSAEHIIETSMKKIREEAKWSVENIPVIEKWLDDYVARYGVNDELLVQN 475
           S++Y+  +  +     + E+  K+  E A+W  ENI  I+ + ++ + R   +    + N
Sbjct: 72  SSIYLKQERSYCIIMDLSESKHKEYIERAQWIEENISNIKPFTEEDIKRITSDYNTNLGN 131

Query: 474 K*YHKVYK 451
             + KVYK
Sbjct: 132 GGFGKVYK 139


>06_03_1445 -
           30209354-30209396,30209798-30209875,30210220-30210285,
           30212275-30212322,30212408-30212571,30212726-30213581,
           30213673-30213786,30213853-30213996,30214075-30214304,
           30214584-30214724,30214810-30214887,30214972-30215053,
           30215130-30215184,30215284-30215407,30215548-30215641,
           30215718-30215794,30215873-30215982,30216058-30216655
          Length = 1033

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -3

Query: 666 LDLVSNLYVAHQGEFGSAEHIIETSMKKIREEAKWSV 556
           L ++ N+Y AHQ   G  + ++++ +  +     W V
Sbjct: 772 LQIIDNIYSAHQATTGQVKRLLQSILNSVTLRQDWRV 808


>06_03_1433 -
           30129184-30129226,30129628-30129705,30130050-30130115,
           30132105-30132152,30132238-30132401,30132556-30133411,
           30133503-30133616,30133683-30133826,30133905-30134134,
           30134414-30134554,30134640-30134717,30134802-30134883,
           30134958-30135012,30135112-30135235,30135376-30135469,
           30135546-30135622,30135701-30135810,30135886-30136483
          Length = 1033

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -3

Query: 666 LDLVSNLYVAHQGEFGSAEHIIETSMKKIREEAKWSV 556
           L ++ N+Y AHQ   G  + ++++ +  +     W V
Sbjct: 772 LQIIDNIYSAHQATTGQVKRLLQSILNSVTLRQDWRV 808


>12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,
            7302885-7304042,7304133-7304291,7304397-7304504,
            7305045-7305304,7305936-7306101,7307025-7307050,
            7307318-7307402,7307486-7307695,7308815-7308872,
            7308964-7309037,7309323-7309373,7309576-7309664,
            7310027-7310104,7310164-7310269
          Length = 1140

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 667  TRSSVQLIRSSPGRIRVCRTHHRDFHEEDTRRSQMVRREHTGHRKMAR 524
            +RS+  L+  +   + V    H++FHE    R+ ++  EHT     +R
Sbjct: 860  SRSAAYLVLFASCLLAVAAASHQEFHEAAGSRTLLMSHEHTNQVHCSR 907


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,853,831
Number of Sequences: 37544
Number of extensions: 336095
Number of successful extensions: 728
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)