Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b10f
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    41   1e-04
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   3.4  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    26   4.5  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   6.0  
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    25   6.0  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    25   6.0  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   7.9  

>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
 Frame = +3

Query: 204 LEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISF---WDVQA 374
           L K V+P  Y L L P L+   Y G V + L  L++S+ ++LH  +   ++    W  Q 
Sbjct: 20  LPKNVKPIHYDLSLYPDLETFTYGGKVVVTLDVLEDSNSITLHGINLRILTAALEWGSQT 79

Query: 375 YPASDAEHPVERVVVK--ELRMDVKKPILTLYFEKPIPKGTEGHIELTY 515
             AS+  +  ER+V++           +LTL F   I  G EG    +Y
Sbjct: 80  VWASEVSYGDERIVLQFPSTVPANSVAVLTLPFTARISSGMEGFYRSSY 128


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 300 WLQESDELSLHCDHELGISFWDVQAYPAS--DAEHPVERVVVKE 425
           ++ +S E      +  GI FWD   YP     +E P+  V +K+
Sbjct: 463 YISKSYEFCSSVKNNFGIDFWDQVEYPQPYVASEWPIRYVSIKD 506


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 126 LPVGGNTPRRLPEQQAGSLLYSSCSNP 46
           LP+  NTP + PE++  SL  +S  NP
Sbjct: 110 LPLSINTPAQWPEKEVYSLQGTSIFNP 136


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 444 KPILTLYFEKPIPKGTEGHIELTYRGNIH 530
           K I  L    PIP+G +   EL+Y+ N H
Sbjct: 77  KHISKLPIASPIPRGLDRSGELSYKDNNH 105


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 176 RIWARYGNPFGEDRGAHWIQAGLRAVPRRRSLQRNREN 289
           R+   Y NP G+D  +  ++  L     R S++ N EN
Sbjct: 133 RVIGYYSNPHGKDEDSFDMRKPLSRDVNRESIRENGEN 170


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 183 GLAMETRLEKIVEPTGYKLDLEPFLDDGVYRG 278
           G+A  T L KIV+  G KLD+    D GV  G
Sbjct: 309 GVASLTMLPKIVDAVGDKLDV--LFDSGVRSG 338


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -2

Query: 551 ESLGDTHVNIASIRQLYMSFGSLGDRLFEIQSQYRLFDVHTKLLH 417
           ESL    ++   I+QL  SFG+L +      S+ RLF++ T + H
Sbjct: 98  ESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAH 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,739
Number of Sequences: 5004
Number of extensions: 51192
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)