Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b10f
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 31 0.50
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 31 0.66
03_05_0573 - 25737373-25737774 31 0.87
08_02_0385 + 16574553-16574885 29 2.0
09_04_0414 - 17393780-17394826 29 2.7
02_02_0700 + 13058446-13058790,13059352-13059582,13060083-130602... 29 2.7
12_02_1162 + 26612571-26613986,26614095-26614142 29 3.5
08_02_0957 + 23033602-23034749,23035519-23035765,23036598-230367... 28 6.1
01_05_0260 + 20121679-20122101,20122188-20122853 27 8.1
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = -2
Query: 479 DRLFEIQSQY--RLFDV-HTKLLHNDTFYWMFRVRRWIRLYV 363
DRLF+ Q Q+ +L+D+ H ++H FY +FR R ++Y+
Sbjct: 765 DRLFKEQMQHIIQLWDLCHVSIIHRTQFYLLFRGDRADQIYI 806
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 126 EVSASHIIKARSIDLNNAYGLAMETRLEKIVEPTGYKLDLEPFLDDGVYR 275
E+S IIK +D N + TR+ ++ E G ++EP DD R
Sbjct: 276 EISTWDIIKCAIVDSNCGSRVIATTRISQVAEEVGDIYNMEPLSDDNSKR 325
>03_05_0573 - 25737373-25737774
Length = 133
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 279 FLC--RLRRRGTALSPACIQWAPRSSPNGFP*RA 184
F C RL+RR L P ++W P SSP P RA
Sbjct: 49 FACPHRLQRRDPPLLPRLVRWPPSSSPGVRPGRA 82
>08_02_0385 + 16574553-16574885
Length = 110
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 282 VKIQLKWLQESDELSLHCDHE 344
+KI ++W++E +L L CDH+
Sbjct: 47 MKIMMRWMREKQKLRLICDHD 67
>09_04_0414 - 17393780-17394826
Length = 348
Score = 29.1 bits (62), Expect = 2.7
Identities = 25/78 (32%), Positives = 37/78 (47%)
Frame = +3
Query: 234 KLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQAYPASDAEHPVERV 413
K D PFL + Y+ ++K L +D ++ D G+S DV PA+D R+
Sbjct: 40 KFDFSPFLIE--YKSG---RVKRLMGTDVVAASADVLTGVSSRDVAIDPANDVR---ARL 91
Query: 414 VVKELRMDVKKPILTLYF 467
+ R K P+L LYF
Sbjct: 92 YLPSFRATAKVPVL-LYF 108
>02_02_0700 +
13058446-13058790,13059352-13059582,13060083-13060241,
13060483-13060635,13061619-13061702,13061847-13061915,
13062374-13062421,13062487-13062621
Length = 407
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 88 LWEPAWRIPSHRKRYRLVTLSKPEASTSITHMGSLWKP 201
L +P+ + HR LV + PEA +SI+ +GS KP
Sbjct: 73 LLKPSASVALHRHSNALVDVLPPEADSSISLLGSSEKP 110
>12_02_1162 + 26612571-26613986,26614095-26614142
Length = 487
Score = 28.7 bits (61), Expect = 3.5
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Frame = +3
Query: 24 QTSRHDVED*NKMNIEVILLAALGACVAYSLPPEEVSASH----IIKARS-IDLNNAYGL 188
Q H V + K N VI + LP E+V H I K +S ++
Sbjct: 71 QVQGHFVPEIQKYNPYVIFKGEQLPVPIWELPEEKVQDFHDRYFIAKDKSRVEARKTLNR 130
Query: 189 AMETRLEKIVEPTGYKLDLEPFLDDGVYRGTVKIQL 296
+E + I GYK ++ + D+ + VK+ L
Sbjct: 131 LLEGNINTIERGHGYKFNIPKYTDNMEFNEEVKVSL 166
>08_02_0957 +
23033602-23034749,23035519-23035765,23036598-23036744,
23036849-23037076
Length = 589
Score = 27.9 bits (59), Expect = 6.1
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +3
Query: 129 VSASHIIKARSIDLNNAYGLAME--TRLEKI-VEPTGYKLDLEPFLDDGVYRGTVKIQLK 299
V AS ++ ++DL + +RLE + E D+E F + V TVKIQ
Sbjct: 228 VEASQALEKEALDLESKRTKLTSGPSRLEALQAEKEALTADVEKF-EAVVKSWTVKIQ-- 284
Query: 300 WLQESDELSLHCDHELGISFWDVQAYPASDAE 395
E +E S+H + EL D Q A + E
Sbjct: 285 ---EKEESSVHLEKELEAKLMDQQRIAAENEE 313
>01_05_0260 + 20121679-20122101,20122188-20122853
Length = 362
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 126 EVSASHIIKARSIDLNNAYGLAMETRLEKIVEPTGYK 236
+VSA I ID+ A+GL+++ + + ++ P YK
Sbjct: 315 DVSAEAAIDKDGIDMAEAFGLSVQLKEKLLLVPVDYK 351
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,658,274
Number of Sequences: 37544
Number of extensions: 366069
Number of successful extensions: 1070
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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