Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b10f
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    33   0.17 
SB_49736| Best HMM Match : Fibrinogen_C (HMM E-Value=2.3e-10)          29   2.1  
SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_34720| Best HMM Match : Fibrinogen_C (HMM E-Value=7.8e-13)          29   2.1  
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)                 29   2.7  
SB_45006| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_36893| Best HMM Match : Fibrinogen_C (HMM E-Value=2.4e-24)          29   3.6  
SB_53228| Best HMM Match : CITED (HMM E-Value=2.5)                     28   4.8  
SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_44495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_18055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_17392| Best HMM Match : DUF385 (HMM E-Value=1.1)                    28   6.3  
SB_8742| Best HMM Match : TPR_2 (HMM E-Value=0.00046)                  28   6.3  
SB_44839| Best HMM Match : RVT_1 (HMM E-Value=0.071)                   27   8.3  
SB_1910| Best HMM Match : 7tm_1 (HMM E-Value=0.0013)                   27   8.3  

>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 524  IASIRQLYMSFGSLGDRLFEIQSQYRLFDVHTKLLHNDTFYWMF 393
            I SIRQ+  +    G     I   +RL DVH ++  ND  +W F
Sbjct: 1370 ITSIRQVIKTANEYGKNARIILELFRLLDVHDEMALNDIQFWSF 1413


>SB_49736| Best HMM Match : Fibrinogen_C (HMM E-Value=2.3e-10)
          Length = 98

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 176 RIWARYGNPFGEDRGAHWI 232
           R WA Y N FG+ +G HW+
Sbjct: 27  RDWAEYKNGFGDLQGEHWL 45


>SB_42582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 939

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 176 RIWARYGNPFGEDRGAHWI 232
           R WA Y N FG+ +G HW+
Sbjct: 269 RDWAEYKNGFGDLQGEHWL 287


>SB_34720| Best HMM Match : Fibrinogen_C (HMM E-Value=7.8e-13)
          Length = 168

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 176 RIWARYGNPFGEDRGAHWI 232
           R WA Y N FG+ +G HW+
Sbjct: 27  RDWAEYKNGFGDLQGEHWL 45


>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
          Length = 1510

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 201  RLEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGIS 356
            RL   V P  Y L L+  +    Y G+V I +   Q +D + LHC   L ++
Sbjct: 1446 RLPTNVIPNNYDLYLDVNMKKKNYTGSVNILVTVTQSTDLVILHCKGSLRVT 1497


>SB_45006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 201 RLEKIVEPTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGIS 356
           RL   V P  Y L L+  +    Y G+V I +   Q +D + LHC   L ++
Sbjct: 32  RLPTNVIPNNYDLYLDVNMKKKNYTGSVNILVTVTQSTDLVILHCKGSLRVT 83


>SB_36893| Best HMM Match : Fibrinogen_C (HMM E-Value=2.4e-24)
          Length = 411

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 176 RIWARYGNPFGEDRGAHWIQAGLRAVPRRRSLQRN 280
           R W  Y N FG+ +G HW+  GL  + R  +   N
Sbjct: 242 RNWTEYKNGFGDLQGEHWL--GLDRIHRMNNAVTN 274


>SB_53228| Best HMM Match : CITED (HMM E-Value=2.5)
          Length = 417

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +2

Query: 164 RPQ*RIWARYGNPFGEDRGAHWIQAGLRAVPRRRSLQRNRENPT 295
           RPQ R W  Y  P  E R   +   GL   P R+   R+ E PT
Sbjct: 297 RPQGRRWRPYSRPRSELRRQRFALPGLGCYPWRKQTFRH-EGPT 339


>SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 572

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
 Frame = +2

Query: 437 RQKADIDFVFRKADPQGN----RRTYRVDVSRQYSHG-CHRG 547
           R  A +D  F   DP+GN    R  Y+  V + Y+ G CH G
Sbjct: 485 RVDAPLDLSFASIDPRGNFATKRGEYQTSVEKLYTAGDCHYG 526


>SB_44495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 176 RIWARYGNPFGEDRGAHWI 232
           R W  Y N FG+ +G HW+
Sbjct: 22  RNWTEYKNGFGDLQGEHWL 40


>SB_18055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 483 WGSAFRNTKSISAF*RPYEAPSQRHVLLDVPRQTLDTL 370
           W  AFRN+  +SA  + YE    R   ++ P + LDTL
Sbjct: 18  WADAFRNSPDMSAILQTYE--GLRSQGIEFPPKDLDTL 53


>SB_17392| Best HMM Match : DUF385 (HMM E-Value=1.1)
          Length = 942

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 105 PRRLPEQQAGSLLYSSCSNPPRRALRSVGVADR 7
           PR  P QQ    +  + SNPP   L + G ADR
Sbjct: 697 PRPRPSQQPAPRVRGARSNPPPLTLHTGGEADR 729


>SB_8742| Best HMM Match : TPR_2 (HMM E-Value=0.00046)
          Length = 940

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 105 AYSLPPEEVSASHIIKARSIDLNNAYGLAMETRLEKIVEPTGYKLDLEPFLD 260
           ++++PPE  S    I+A    +NN + L + T    + +P   K D E  LD
Sbjct: 401 SFAIPPELQSEHQAIEAEFKAMNNPFPLNIATNAGYVADP--IKADTETALD 450


>SB_44839| Best HMM Match : RVT_1 (HMM E-Value=0.071)
          Length = 351

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 312 SDELSLHCDHELGISFWDVQAYPA 383
           SDE +LH  H + IS WD +A PA
Sbjct: 14  SDE-ALHAFHSVLISIWDEEAMPA 36


>SB_1910| Best HMM Match : 7tm_1 (HMM E-Value=0.0013)
          Length = 550

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 121 RKRYRLVTL-SKPEASTSITHMGSLWKPVWRRSWSPL 228
           RK  RLV L S P   T   ++ S+  P+W R W+ L
Sbjct: 153 RKSARLVKLTSTPSVHTRRKYLLSVLGPLWLRRWNTL 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,683,285
Number of Sequences: 59808
Number of extensions: 393061
Number of successful extensions: 1073
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)