Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b10f
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77662-8|CAB01196.1|  206|Caenorhabditis elegans Hypothetical pr...    44   8e-05
Z77662-6|CAB01195.1|  210|Caenorhabditis elegans Hypothetical pr...    36   0.021
AF025465-8|AAO38628.1|  233|Caenorhabditis elegans Hypothetical ...    31   0.59 
Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z74030-11|CAA98446.1|  481|Caenorhabditis elegans Hypothetical p...    27   7.2  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule abnor...    27   9.5  
U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule abnor...    27   9.5  
AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.      27   9.5  

>Z77662-8|CAB01196.1|  206|Caenorhabditis elegans Hypothetical
           protein F47B8.8 protein.
          Length = 206

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
 Frame = +3

Query: 222 PTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQAYPASDAEHP 401
           PT Y L L+P + +  Y G V++  ++  E+ E+ +    +   +   +  + A   E P
Sbjct: 10  PTRYMLQLDPNMANKTYCGKVRVDYEFTAETSEIKIQASRDFQWTSIRLINFYAVYLECP 69

Query: 402 V-ERVVVKELRMDVKKPILTLYFEKPI-PKGTEG--HIELTYRGNIHM-GVTEGFF 554
           +   V+  +   D++  ILTL  + P+ P  T+   +IEL + G I + G T G F
Sbjct: 70  IYASVLCDDYNHDLESEILTLSLDTPLTPDNTQNGFYIELEFTGPIIIAGQTTGLF 125


>Z77662-6|CAB01195.1|  210|Caenorhabditis elegans Hypothetical
           protein F47B8.6 protein.
          Length = 210

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
 Frame = +3

Query: 222 PTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQAYPASDAEHP 401
           P    L L+P L +  Y G VKI  ++  E+ E+ +    +   +   +  +   +   P
Sbjct: 10  PIKILLQLDPNLGNNSYNGRVKIDYEFTGETSEIKIQTSRDFQWTSVRLATFYDFNEGCP 69

Query: 402 VERVVVKELRM-DVKKPILTLYFEKPI-PKGTEG--HIELTYRGNIH-MGVTEGFF 554
           V   V  E  + D +  ILTL    P+ P+ TE   +IEL + G I+  G T G +
Sbjct: 70  VYASVDCENYVHDAESEILTLPLGNPLTPETTENGFYIELEWTGPINPQGETTGLY 125


>AF025465-8|AAO38628.1|  233|Caenorhabditis elegans Hypothetical
           protein K02E7.4 protein.
          Length = 233

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = -2

Query: 569 RVRRFEESLGDTHVNIASIRQLYMSFGSLGDRLFEIQSQYRL---FDVHTKLLHNDTFYW 399
           R+  F      THV + S+ + Y  F +  + +F+I +   L   F V   L +   FY+
Sbjct: 124 RLDNFVSEFLKTHVQMLSVEEQYKLFMNSTNFMFKISNLRSLNPDFQVFFVLKNLKMFYF 183

Query: 398 MFRVRRWIRLYVPKANAK 345
           + +++ ++  YVP+   K
Sbjct: 184 LSQIQGFMFKYVPQKGTK 201


>Z46812-2|CAA86844.1| 1027|Caenorhabditis elegans Hypothetical
           protein ZK675.2 protein.
          Length = 1027

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 90  LGACVAYSLPPEEVSASHIIKARSIDLNNAYGLAMETRLEKIVEPTGYKLDLE-PFLDDG 266
           L  C      P++  A+H+ K+ S D+N  YG+    R E I   T    +LE   +D  
Sbjct: 668 LRQCRGIEEDPDDFWATHVRKSVSCDIN--YGIRFTKRGEVIQLMTAIGAELERKLIDSK 725

Query: 267 VYRGTVKIQL 296
           +  G++ ++L
Sbjct: 726 LTAGSITLKL 735


>Z69794-2|CAA93681.1|  786|Caenorhabditis elegans Hypothetical
           protein R03G8.4 protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
 Frame = +3

Query: 201 RLEKIVEPTGYKLDLEPFL-------DDGVYR--GTVKIQLKWLQESDELSLHCD 338
           RL + V PT Y+L +  FL       D+  +   G VKIQ++  +E+D + LH D
Sbjct: 31  RLPRNVFPTEYRLHITTFLPGYKWEADEKSFTFIGDVKIQIEVKEETDTIVLHTD 85


>Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical
           protein C29F7.2 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 336 DHELGISFWDV--QAYPASDAEHPVERVVVKELRMDVKKPILTLYFEK 473
           D   GI  W +  +  P  D  H +      E R ++ KP+L  YF+K
Sbjct: 268 DDIAGIIDWQITHRGSPMEDFHHIMSTCTSVENRKNLTKPLLDYYFDK 315


>Z74030-11|CAA98446.1|  481|Caenorhabditis elegans Hypothetical
           protein D1054.13 protein.
          Length = 481

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +3

Query: 69  EVILLAALGACVAYSLPPEEVSASHIIKARSID--LNNAYGLAMETRLEKI 215
           E++ +    +C A   P    + S I  A  +   +NNAYGL  E  + KI
Sbjct: 209 EILCVMTTTSCFAPRSPDNVEAISAICAAHDVPHLVNNAYGLQSEETIRKI 259


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical
           protein M03A8.2 protein.
          Length = 2275

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 255 LDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQAYPASDAE 395
           L DG Y G +KI++ WL    + +  C  +L ++F   +    +D E
Sbjct: 66  LIDG-YLGKIKIEIPWLSLMTDPTRMCIEDLQLTFRGAEVMKINDIE 111


>U52003-5|AAG00057.1|  730|Caenorhabditis elegans P granule
           abnormality protein 1,isoform a protein.
          Length = 730

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 23/87 (26%), Positives = 36/87 (41%)
 Frame = +3

Query: 222 PTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQAYPASDAEHP 401
           PT  + ++ P L   VY+  V +    +Q      +    +     WDV    A D E  
Sbjct: 289 PTSVRAEVFPGLQRSVYKSAVFLGNHIIQ------VLLGSKKSFEDWDVVGV-AKDLESA 341

Query: 402 VERVVVKELRMDVKKPILTLYFEKPIP 482
            +R  + EL    +  IL   F+KP+P
Sbjct: 342 WKRRAIAELIKKFQVSILEQCFDKPVP 368


>U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule
           abnormality protein 1,isoform b protein.
          Length = 771

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 23/87 (26%), Positives = 36/87 (41%)
 Frame = +3

Query: 222 PTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQAYPASDAEHP 401
           PT  + ++ P L   VY+  V +    +Q      +    +     WDV    A D E  
Sbjct: 330 PTSVRAEVFPGLQRSVYKSAVFLGNHIIQ------VLLGSKKSFEDWDVVGV-AKDLESA 382

Query: 402 VERVVVKELRMDVKKPILTLYFEKPIP 482
            +R  + EL    +  IL   F+KP+P
Sbjct: 383 WKRRAIAELIKKFQVSILEQCFDKPVP 409


>AF077868-1|AAC36100.1|  730|Caenorhabditis elegans PGL-1 protein.
          Length = 730

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 23/87 (26%), Positives = 36/87 (41%)
 Frame = +3

Query: 222 PTGYKLDLEPFLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWDVQAYPASDAEHP 401
           PT  + ++ P L   VY+  V +    +Q      +    +     WDV    A D E  
Sbjct: 289 PTSVRAEVFPGLQRSVYKSAVFLGNHIIQ------VLLGSKKSFEDWDVVGV-AKDLESA 341

Query: 402 VERVVVKELRMDVKKPILTLYFEKPIP 482
            +R  + EL    +  IL   F+KP+P
Sbjct: 342 WKRRAIAELIKKFQVSILEQCFDKPVP 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,548,289
Number of Sequences: 27780
Number of extensions: 284043
Number of successful extensions: 790
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)