Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b10f
(576 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.076
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.076
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.076
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 28 0.076
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 28 0.076
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 27 0.18
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.23
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.2
L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein. 23 2.9
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 21 6.6
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 21 6.6
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.076
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 252 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 365
++ G+++ T KI + W D+ HCD + G +D
Sbjct: 101 YVPPGIFKSTCKIDIAWFPFDDQ---HCDMKFGSWTYD 135
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.076
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 252 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 365
++ G+++ T KI + W D+ HCD + G +D
Sbjct: 101 YVPPGIFKSTCKIDITWFPFDDQ---HCDMKFGSWTYD 135
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.076
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 252 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 365
++ G+++ T KI + W D+ HCD + G +D
Sbjct: 101 YVPPGIFKSTCKIDITWFPFDDQ---HCDMKFGSWTYD 135
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.9 bits (59), Expect = 0.076
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 252 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 365
++ G+++ T KI + W D+ HCD + G +D
Sbjct: 169 YVPPGIFKSTCKIDITWFPFDDQ---HCDMKFGSWTYD 203
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.9 bits (59), Expect = 0.076
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 252 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 365
++ G+++ T KI + W D+ HCD + G +D
Sbjct: 169 YVPPGIFKSTCKIDITWFPFDDQ---HCDMKFGSWTYD 203
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 26.6 bits (56), Expect = 0.18
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +3
Query: 252 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 365
++ G+++ T K+ + W D+ HCD + G +D
Sbjct: 101 YVPPGIFKSTCKMDIAWFPFDDQ---HCDMKFGSWTYD 135
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.23
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 252 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 365
++ G++ T KI + W D+ HCD + G +D
Sbjct: 101 YVPPGIFGSTCKIDIAWFPFDDQ---HCDMKFGSWTYD 135
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.0 bits (47), Expect = 2.2
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +3
Query: 252 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 365
++ G+++ T KI + W D+ C+ + G +D
Sbjct: 138 YVPPGIFKSTCKIDITWFPFDDQ---RCEMKFGSWTYD 172
>L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein.
Length = 382
Score = 22.6 bits (46), Expect = 2.9
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 193 WKPVWRRSWSPL 228
W+P++R++W+ L
Sbjct: 147 WRPIFRQNWASL 158
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.4 bits (43), Expect = 6.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 425 ASYGRQKADIDFVFRKADP 481
ASYG D+ F++++ DP
Sbjct: 179 ASYGWTTDDLVFLWKEGDP 197
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.4 bits (43), Expect = 6.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 425 ASYGRQKADIDFVFRKADP 481
ASYG D+ F++++ DP
Sbjct: 179 ASYGWTTDDLVFLWKEGDP 197
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,079
Number of Sequences: 438
Number of extensions: 3786
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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