Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b09r
(679 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032657-7|CAA21740.1| 340|Caenorhabditis elegans Hypothetical ... 85 3e-17
U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like pr... 31 0.57
U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like pr... 31 0.57
U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like pr... 31 0.57
U97194-5|AAB52448.1| 442|Caenorhabditis elegans Hypothetical pr... 31 0.76
Z70751-4|CAI91168.1| 497|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z70751-3|CAA94752.1| 529|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z70750-18|CAI91163.1| 497|Caenorhabditis elegans Hypothetical p... 30 1.3
Z70750-17|CAA94749.1| 529|Caenorhabditis elegans Hypothetical p... 30 1.3
Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical p... 29 2.3
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 28 7.0
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 28 7.0
Z69646-4|CAD36489.1| 611|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z69646-3|CAA93476.2| 630|Caenorhabditis elegans Hypothetical pr... 27 9.3
AF497829-1|AAM18107.1| 611|Caenorhabditis elegans putative Na-H... 27 9.3
AF497828-1|AAM18106.1| 630|Caenorhabditis elegans putative Na-H... 27 9.3
>AL032657-7|CAA21740.1| 340|Caenorhabditis elegans Hypothetical
protein Y47H9C.7 protein.
Length = 340
Score = 85.4 bits (202), Expect = 3e-17
Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 2/220 (0%)
Frame = -3
Query: 665 LREPIRDHIAELRTELETMRSSITSQAREHVRADEVLLTFG--ASALVERFLRPTQNRNC 492
+++ ++ I EL TE+E+ R I SQ+ E + ++V+L +S + FL
Sbjct: 123 IKKDLQASIKELVTEIESSRECIASQSTELLFNNDVVLVHSLRSSQTMHNFLSHAVKSGR 182
Query: 491 KVVVAEGTDVGESHAMARRLSNSGVSVTVINSSCVFAVMSRVNKVVVEVQAAMGGGAVLG 312
K V + D E H + ++ T I V + M +KVV+ A G+ L
Sbjct: 183 KHRVIDVVDE-EEH-----IESTPDFATAIELYEVASKMPEASKVVLVAAAYFPDGSCLV 236
Query: 311 DAGLHSVTLAAKYYKIPVVALAPLYRMLPHHLYDPQSFGSLSSPLQTMEYADCGSDSLQV 132
AG H + L AK + +PV LAP Y++ P + +P S + S + + + +
Sbjct: 237 PAGGHQIALLAKRHCVPVYVLAPFYKLCPFFMTNPDSLHTFRSNSLPFDLSAKSAGLVDC 296
Query: 131 LAPKFDFVPPDHITLFITNQGGSCPSYIYRLLSEIYDPKD 12
L P FD + D +TLF++N PS++ RL + Y +D
Sbjct: 297 LHPAFDCLQSDLVTLFVSNTSCVIPSHVNRLKEDYYHSQD 336
>U41536-3|AAN39668.1| 1576|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform c protein.
Length = 1576
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 641 IAELRTELETMRSSITSQAREHVRADEV 558
I ELR E+ET+R IT +EH +E+
Sbjct: 396 IRELREEVETLRMQITQTKKEHAETEEL 423
>U41536-2|AAM51501.1| 1610|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform b protein.
Length = 1610
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 641 IAELRTELETMRSSITSQAREHVRADEV 558
I ELR E+ET+R IT +EH +E+
Sbjct: 396 IRELREEVETLRMQITQTKKEHAETEEL 423
>U41536-1|AAK39239.1| 1595|Caenorhabditis elegans Kinesin-like
protein protein 4,isoform a protein.
Length = 1595
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 641 IAELRTELETMRSSITSQAREHVRADEV 558
I ELR E+ET+R IT +EH +E+
Sbjct: 396 IRELREEVETLRMQITQTKKEHAETEEL 423
>U97194-5|AAB52448.1| 442|Caenorhabditis elegans Hypothetical
protein C37A2.3 protein.
Length = 442
Score = 31.1 bits (67), Expect = 0.76
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = -3
Query: 557 LLTFGASALVERFLRP--TQNRNCKVVVAE---GTDVGESHAMARR 435
L FG+ AL ERFLRP T + + V+E G+DV H ARR
Sbjct: 154 LAQFGSDALRERFLRPSITGDLVSSLAVSEPHAGSDVSAVHTHARR 199
>Z70751-4|CAI91168.1| 497|Caenorhabditis elegans Hypothetical
protein F11A3.2b protein.
Length = 497
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 359 VVVEVQAAMGGGAVLGDAGLHSVTLAAKYYKIPVVALAPLYRML 228
+++ A GAV G +V L A +Y IPV+ +A ++ +
Sbjct: 401 LILGCSAIFANGAVAARKGALAVVLCANHYNIPVIVVAEHFKFI 444
>Z70751-3|CAA94752.1| 529|Caenorhabditis elegans Hypothetical
protein F11A3.2a protein.
Length = 529
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 359 VVVEVQAAMGGGAVLGDAGLHSVTLAAKYYKIPVVALAPLYRML 228
+++ A GAV G +V L A +Y IPV+ +A ++ +
Sbjct: 433 LILGCSAIFANGAVAARKGALAVVLCANHYNIPVIVVAEHFKFI 476
>Z70750-18|CAI91163.1| 497|Caenorhabditis elegans Hypothetical
protein F11A3.2b protein.
Length = 497
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 359 VVVEVQAAMGGGAVLGDAGLHSVTLAAKYYKIPVVALAPLYRML 228
+++ A GAV G +V L A +Y IPV+ +A ++ +
Sbjct: 401 LILGCSAIFANGAVAARKGALAVVLCANHYNIPVIVVAEHFKFI 444
>Z70750-17|CAA94749.1| 529|Caenorhabditis elegans Hypothetical
protein F11A3.2a protein.
Length = 529
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 359 VVVEVQAAMGGGAVLGDAGLHSVTLAAKYYKIPVVALAPLYRML 228
+++ A GAV G +V L A +Y IPV+ +A ++ +
Sbjct: 433 LILGCSAIFANGAVAARKGALAVVLCANHYNIPVIVVAEHFKFI 476
>Z46934-12|CAA87044.3| 539|Caenorhabditis elegans Hypothetical
protein ZK1320.6 protein.
Length = 539
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -3
Query: 671 QDLREPIRDHIAELRTELETMRSSITS 591
+DLRE +R+H+ EL + ET+ +++ S
Sbjct: 206 EDLREKVREHLGELSKQSETIGNALHS 232
>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
nucleotide exchange factorfor RAS protein.
Length = 1413
Score = 27.9 bits (59), Expect = 7.0
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Frame = -3
Query: 281 AKYYKIPVVALAPLYRMLPHHLYDPQSFGSLSSPLQTMEYADCGSDSLQVLAPKFDFVP- 105
A Y +P + P++ + +H Y + SS + DC S +V+ D P
Sbjct: 392 AVQYVLPQLLHIPIFHIYQYHEYITRLHQLSSSEEDRRDLNDCRSAFERVVGCVSDMSPE 451
Query: 104 -PDHITLFITNQGGSCPSYIYRLLSEIYDPKD 12
IT F+ Q S Y + L+EI D
Sbjct: 452 LKTKITQFLDQQAKSEKIYNVKRLNEIQSSID 483
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 27.9 bits (59), Expect = 7.0
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Frame = -3
Query: 281 AKYYKIPVVALAPLYRMLPHHLYDPQSFGSLSSPLQTMEYADCGSDSLQVLAPKFDFVP- 105
A Y +P + P++ + +H Y + SS + DC S +V+ D P
Sbjct: 392 AVQYVLPQLLHIPIFHIYQYHEYITRLHQLSSSEEDRRDLNDCRSAFERVVGCVSDMSPE 451
Query: 104 -PDHITLFITNQGGSCPSYIYRLLSEIYDPKD 12
IT F+ Q S Y + L+EI D
Sbjct: 452 LKTKITQFLDQQAKSEKIYNVKRLNEIQSSID 483
>Z69646-4|CAD36489.1| 611|Caenorhabditis elegans Hypothetical
protein F57C7.2b protein.
Length = 611
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 107 PPDHITLFITNQGGSCPSYIYRLLSEIYDPKDYQI 3
PPD++ L + +GGS S+ Y L+ + K +I
Sbjct: 114 PPDYLMLEVKPEGGSRVSFHYELIEGFFADKRKKI 148
>Z69646-3|CAA93476.2| 630|Caenorhabditis elegans Hypothetical
protein F57C7.2a protein.
Length = 630
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 107 PPDHITLFITNQGGSCPSYIYRLLSEIYDPKDYQI 3
PPD++ L + +GGS S+ Y L+ + K +I
Sbjct: 114 PPDYLMLEVKPEGGSRVSFHYELIEGFFADKRKKI 148
>AF497829-1|AAM18107.1| 611|Caenorhabditis elegans putative Na-H
exchanger isoform 5b protein.
Length = 611
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 107 PPDHITLFITNQGGSCPSYIYRLLSEIYDPKDYQI 3
PPD++ L + +GGS S+ Y L+ + K +I
Sbjct: 114 PPDYLMLEVKPEGGSRVSFHYELIEGFFADKRKKI 148
>AF497828-1|AAM18106.1| 630|Caenorhabditis elegans putative Na-H
exchanger isoform 5a protein.
Length = 630
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 107 PPDHITLFITNQGGSCPSYIYRLLSEIYDPKDYQI 3
PPD++ L + +GGS S+ Y L+ + K +I
Sbjct: 114 PPDYLMLEVKPEGGSRVSFHYELIEGFFADKRKKI 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,332,635
Number of Sequences: 27780
Number of extensions: 279504
Number of successful extensions: 843
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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