Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b09r
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.66 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.2  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 561 LVRPHV--LAGLTRYGRPHCLQLGSELCDVISY 653
           L +PH+  L GL   GRP  LQL S+   +I Y
Sbjct: 310 LYQPHLRGLNGLEFAGRPQNLQLQSQRNQLIQY 342


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 677 TDQDLREPIRDHIAELRTELETMRSSI 597
           +D+DLRE I +    +R + E  RS +
Sbjct: 313 SDEDLREAIDEFKTPMRNDSERNRSPV 339


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 588 LTRYGRPHCLQ 620
           + RYG+PHC +
Sbjct: 588 VVRYGKPHCAE 598


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 588 LTRYGRPHCLQ 620
           + RYG+PHC +
Sbjct: 626 VVRYGKPHCAE 636


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 659 EPIRDHIAELRTELETMRSSITS 591
           E ++  I  LRT++ +  SSI+S
Sbjct: 358 EKLKQDILNLRTDISSSSSSISS 380


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +1

Query: 274  YLAARVTEWRPASPRTAPPP 333
            Y     T WR   P   PPP
Sbjct: 1342 YSTLERTAWRQQQPPPPPPP 1361


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 283 ARVTEWRPASPRTAPPP 333
           A V  W+P S    PPP
Sbjct: 752 ANVNLWQPLSVSIPPPP 768


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,340
Number of Sequences: 438
Number of extensions: 3845
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)