Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b09f
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    26   0.21 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   3.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.0  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 333 VQAAMGGGAVLGDAGLHSV 389
           V AA GGG+VLGD  + ++
Sbjct: 26  VDAATGGGSVLGDVNISAI 44


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 200 DDDLAVPILGRPQEPLD 150
           D +L++  LG PQ PLD
Sbjct: 11  DQNLSMGSLGAPQSPLD 27


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 17   EGTYKRSHRRAPNRAGDNEVVHN 85
            +G Y+      P+R G  + +HN
Sbjct: 1398 DGDYENDSGSGPDRIGRRKTIHN 1420


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 17   EGTYKRSHRRAPNRAGDNEVVHN 85
            +G Y+      P+R G  + +HN
Sbjct: 1398 DGDYENDSGSGPDRIGRRKTIHN 1420


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 17   EGTYKRSHRRAPNRAGDNEVVHN 85
            +G Y+      P+R G  + +HN
Sbjct: 1398 DGDYENDSGSGPDRIGRRKTIHN 1420


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 17   EGTYKRSHRRAPNRAGDNEVVHN 85
            +G Y+      P+R G  + +HN
Sbjct: 1398 DGDYENDSGSGPDRIGRRKTIHN 1420


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +3

Query: 420 VVAL-APLYRMLPHHLYDPQS 479
           VV L AP   ++ HHL +PQS
Sbjct: 247 VVGLPAPTSSIMMHHLVNPQS 267


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 71  HCLQLGSELCDVISYRFPQ 15
           H +++G+E   VIS+ FP+
Sbjct: 157 HLVRVGTEPRRVISFPFPE 175


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,324
Number of Sequences: 336
Number of extensions: 2560
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)