Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b09f
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...   142   4e-35
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   2.1  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    27   2.1  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   4.9  

>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score =  142 bits (344), Expect = 4e-35
 Identities = 76/201 (37%), Positives = 124/201 (61%), Gaps = 4/201 (1%)
 Frame = +3

Query: 12  DLREPIRDHIAELRTELETMRSSITSQAREHVRADEVLLTFGASALVERFLR-PTQNRNC 188
           D+R  I   I ++  EL+ + + I  Q+ +H+ ++E++LT G S  VE FLR   + R  
Sbjct: 168 DMRAVIISGIQDVIDELDKINTDIEVQSMDHLHSNEIILTQGCSKTVEAFLRFAAKKRKF 227

Query: 189 KVVVAEGTDVGE--SHAMARRLSNSGVSVTVINSSCVFAVMSRVNKVVVEVQAAMGGGAV 362
            V+VAEG    +  SHAMA+RL+ +G+  TVI+ + +FA+MSRVNKV++   A +G G +
Sbjct: 228 SVIVAEGFPNNQKGSHAMAKRLAQAGIDTTVISDATIFAIMSRVNKVILGTHAILGNGGL 287

Query: 363 LGDAGLHSVTLAAKYYKIPVVALAPLYRMLPHHLYDPQSFGSLSSPLQTMEYADCGSDS- 539
           +  +G   V  AA+++  PVV  + +Y++ P + YD +S   LSSP + M + +    S 
Sbjct: 288 VTYSGAQLVAQAARHHATPVVVCSGIYKLSPVYPYDLESIIQLSSPDKIMSFNEGDLISR 347

Query: 540 LQVLAPKFDFVPPDHITLFIT 602
            ++L P +D++PPD + LFIT
Sbjct: 348 AEILNPYYDYIPPDLVDLFIT 368


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = +3

Query: 18  REPIRDHIAELRTELETMRSSITSQAREHVRADEVLLT--FGASALVER---FLRPTQNR 182
           R  + D IAELR  + T+RS   S   + ++   V L+     + ++ +   +++  Q++
Sbjct: 439 RSNLNDKIAELRDAVPTLRSGYNSTTADELKGTYVPLSRKLNKATILSKATEYIKSLQSK 498

Query: 183 NCKVV 197
           N K++
Sbjct: 499 NKKLI 503


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 121 CYSRSGPALWSSGS*GRPRIGTARSSSRKGLTSARVTP 234
           C+     ++WS GS     + T +SSS KG+T   V P
Sbjct: 95  CHDNGQISMWSKGS--WLLVHTLKSSSHKGITGIAVHP 130


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 197 DDLAVPILGRPQEPLDQSAGPERE*HLVRPHVLAGLTR 84
           DD+ V + G   EP+++   P    HL++   L+G T+
Sbjct: 154 DDIPVEVSGGDIEPVNEFTSPPLNSHLLQNIKLSGYTQ 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,106
Number of Sequences: 5004
Number of extensions: 40381
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)