Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b09f
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0069 - 12576197-12576290,12576658-12576851,12577671-125777... 128 3e-30
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 72 3e-13
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 68 7e-12
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 31 0.53
07_03_1326 + 25833278-25833688 31 0.53
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 29 2.1
01_06_0258 + 27950196-27950749,27953670-27954570 29 2.1
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 29 2.8
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 28 5.0
08_01_0531 - 4604556-4604582,4604829-4604921,4605381-4605572,460... 28 6.5
07_03_1589 + 27948546-27948548,27948890-27948958,27949235-279493... 28 6.5
05_05_0226 + 23442971-23443857,23444209-23446324 27 8.7
01_01_0955 - 7494486-7496327 27 8.7
>10_07_0069 -
12576197-12576290,12576658-12576851,12577671-12577796,
12577879-12577981,12578085-12578192,12579343-12579472,
12579685-12579966,12581046-12581200,12581306-12581358
Length = 414
Score = 128 bits (309), Expect = 3e-30
Identities = 76/209 (36%), Positives = 116/209 (55%), Gaps = 13/209 (6%)
Frame = +3
Query: 15 LREPIRDHIAELRTELETMRSSITSQAREHVRADEVLLTFGASALVERFLRPTQN--RNC 188
L+ + I +L E++T I+ QA EH+ +EV+LT G S V+ FL + R+
Sbjct: 174 LKHDVIAAIGDLIDEIDTCYDQISEQAVEHIHQNEVILTLGRSRTVKEFLYAAKEKKRSF 233
Query: 189 KVVVAEGTDVGESHAMARRLSNSGVSVTVINSSCVFAVMSRVNKVVVEVQAAMGGGAVLG 368
+V VAEG + H +A+ L GV TVI S VFA++SRVN V+V A M G V+
Sbjct: 234 RVFVAEGAPRYKGHVLAKELVEKGVQTTVITDSAVFAMISRVNMVIVGAHAIMANGGVIA 293
Query: 369 DAGLHSVTLAAKYYKIPVVALAPLYRMLPHHLYDPQ-SFGSLSSP---LQTMEYADC--- 527
G++ V LAA+ + +P V +A +++ P + ++P+ L SP L E++ C
Sbjct: 294 PVGMNMVALAAQRHAVPFVVVAGSHKLCPLYPHNPEVLLNELKSPSDLLDFGEFSSCMNF 353
Query: 528 ----GSDSLQVLAPKFDFVPPDHITLFIT 602
G+ L V+ P FD+VPP ++LFIT
Sbjct: 354 STQDGTPLLNVVNPTFDYVPPKLVSLFIT 382
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 72.1 bits (169), Expect = 3e-13
Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 12/186 (6%)
Frame = +3
Query: 81 ITSQAREHVRADEVLLTFGASALVERFLRPTQ--NRNCKVVVAEGTDVGESHAMARRLSN 254
I S A VR ++VLLT+G+S++VE L R +V+V + E + RRL
Sbjct: 403 IVSHAITKVRDNDVLLTYGSSSVVEMILDHAHELGRKFRVIVVDSRPKLEGQGLLRRLVE 462
Query: 255 SGVSVTVINSSCVFAVMSRVNKVVVEVQAAMGGGAVLGDAGLHSVTLAAKYYKIPVVALA 434
G++ T + + + +M V +V + + + G V G SV + A + IPV+
Sbjct: 463 KGINCTYTHINAISYIMHEVTRVFLGASSILSNGTVYSRVGTASVAMVAHAFGIPVLVCC 522
Query: 435 PLYRMLPHHLYDPQSFGSLSSP---LQTMEYADCG-------SDSLQVLAPKFDFVPPDH 584
Y+ D L P L+ AD G +++LQ+L +D P D+
Sbjct: 523 EAYKFHERVQLDSICANELGDPDVILKVPGKADLGHLKNLADNENLQLLNLTYDATPSDY 582
Query: 585 ITLFIT 602
+++ IT
Sbjct: 583 VSMIIT 588
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 67.7 bits (158), Expect = 7e-12
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 3/177 (1%)
Frame = +3
Query: 81 ITSQAREHVRADEVLLTFGASALVERFLRPTQN--RNCKVVVAEGTDVGESHAMARRLSN 254
I S A VR D+VLLT+ +S++VE + +VVV + E A+ RL
Sbjct: 398 IVSHAIAKVRDDDVLLTYASSSVVEMIFDHANELGKKFRVVVVDSRPNNEGQALLHRLVA 457
Query: 255 SGVSVTVINSSCVFAVMSRVNKVVVEVQAAMGGGAVLGDAGLHSVTLAAKYYKIPVVALA 434
G+S T + + + +M V +V + + + GAV G +V + A + +PV+
Sbjct: 458 KGISCTYTHINAISYIMHEVTRVFLGASSILSNGAVYSSVGTAAVAMVAHAFGVPVLVCC 517
Query: 435 PLYRMLPHHLYDPQSFGSLSSPLQTMEYADCG-SDSLQVLAPKFDFVPPDHITLFIT 602
DP + +C +++LQ+L K+D +P D++++ IT
Sbjct: 518 -----------DPDVISRVPEREDLCHLKNCTYNENLQLLNLKYDTMPSDYVSMIIT 563
>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
Length = 767
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 420 VVALAPLYRMLPHHLYDPQSFGSLSSPLQTMEYADCGSDSLQVL 551
+V L L R++ HHL P FG++ S LQ + + C S +L
Sbjct: 482 IVQLKRLMRLVGHHLILPDGFGNMES-LQELGFLGCCRSSTNLL 524
>07_03_1326 + 25833278-25833688
Length = 136
Score = 31.5 bits (68), Expect = 0.53
Identities = 28/97 (28%), Positives = 42/97 (43%)
Frame = +3
Query: 99 EHVRADEVLLTFGASALVERFLRPTQNRNCKVVVAEGTDVGESHAMARRLSNSGVSVTVI 278
E A EV+ + A+VE+ L + VV+E + AMA + + VS V+
Sbjct: 16 EGATASEVVEKMVSQAVVEKALWEAFEK----VVSEAVEKKSEGAMASEVVETMVSQAVV 71
Query: 279 NSSCVFAVMSRVNKVVVEVQAAMGGGAVLGDAGLHSV 389
A+ KVV E GGGAV+ + + V
Sbjct: 72 EK----ALWEAFEKVVSEAVEKKGGGAVVSEGAVEKV 104
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +1
Query: 79 P*RVRPASTCGRTRCYSRSGPALWSSGS*GRPRIGTARSSSRKGLTSARVTPWRGG 246
P R+RPA ++C R P+ G+ G PR + R+ TPWRGG
Sbjct: 11 PLRLRPACRVA-SQCGGR--PSTRRRGAGGGPRRAVPQPPVRRPSGDRACTPWRGG 63
>01_06_0258 + 27950196-27950749,27953670-27954570
Length = 484
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/70 (34%), Positives = 35/70 (50%)
Frame = +3
Query: 264 SVTVINSSCVFAVMSRVNKVVVEVQAAMGGGAVLGDAGLHSVTLAAKYYKIPVVALAPLY 443
+VTV S V + ++ + V +V+ GGGA+L D+G LA Y+ V AL+
Sbjct: 328 AVTVKGVS-VAGELLKIPRAVWDVE--QGGGAIL-DSGTSLTMLAKPAYRAVVAALSKRL 383
Query: 444 RMLPHHLYDP 473
LP DP
Sbjct: 384 AGLPRVTMDP 393
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 39 IAELRTELETMRSSITSQAREHVRADEVL 125
IAEL EL+T R+ + ++A H + E+L
Sbjct: 409 IAELNNELDTNRTMLDNEAEAHKKLSEIL 437
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 517 YSMVCSGDDREPKLWGS*R*WGSIR--YRGANATTGIL*YLAARVTEWRPAS 368
Y +C+GD + + WGS W R R A A G++ L R E RP S
Sbjct: 533 YLQICAGDGEDGRQWGSTAPWVVPRCGVRRAKA-PGLVLLLCRRPAEPRPPS 583
>08_01_0531 -
4604556-4604582,4604829-4604921,4605381-4605572,
4605800-4606390
Length = 300
Score = 27.9 bits (59), Expect = 6.5
Identities = 23/75 (30%), Positives = 26/75 (34%)
Frame = -3
Query: 577 GGTKSNFGARTCRESEPQSAYSMVCSGDDREPKLWGS*R*WGSIRYRGANATTGIL*YLA 398
GG GA C E A + V G D WG + A +L
Sbjct: 13 GGGGGGAGAGAC---ELCGAAARVYCGADEATLCWGCDAQVHGANFLVARHARALLCRGC 69
Query: 397 ARVTEWRPASPRTAP 353
AR T WR A PR P
Sbjct: 70 ARPTPWRAAGPRLGP 84
>07_03_1589 +
27948546-27948548,27948890-27948958,27949235-27949335,
27949460-27950173,27951172-27951333,27951669-27952458
Length = 612
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 30 RDHIAELRTELETMRSSITSQAREHVRADEVLLTFGASALVERFLRPTQNRNCKVVVAEG 209
R+H+ E T L R++ + R + ++T GAS + + + KV++A+
Sbjct: 326 RNHVEEADTVLIPARNNRRQETRGSLAGKVAIITGGASGIGKVTAKEFIKNGAKVIIADV 385
Query: 210 TD-VGESHA 233
D +G S A
Sbjct: 386 QDELGHSAA 394
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 27.5 bits (58), Expect = 8.7
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 14/162 (8%)
Frame = +3
Query: 9 QDLREPIRDHIAELRTELETMRSSITSQAREHV---RADEVL-LTFGASALVERFLRPTQ 176
Q L+ +R A + +L M + T+ AR V A+E+L L V+RFL
Sbjct: 36 QSLQLDLRMIAAVMDDQLRAMGRATTADARTAVARLHAEEMLDLAHDVEECVDRFLHRLT 95
Query: 177 NRNCKVVVAEGTDVGE-----SHAMARRLSNSGVSVTVIN-SSCVFAVMSRV--NKVVVE 332
R + G +H +++ S S + + + V R+ K ++
Sbjct: 96 CRQHRGGAGAGASSSSLVRRMAHELSKVQSRSSFADEIQRLKTRVREAQQRIIRMKPTLD 155
Query: 333 VQAAMGGGA--VLGDAGLHSVTLAAKYYKIPVVALAPLYRML 452
V A GGG + G AG S + + +IPV P+ +L
Sbjct: 156 VLAGGGGGGGQLTGAAGTSSTAPSCRASRIPVGIAEPVEELL 197
>01_01_0955 - 7494486-7496327
Length = 613
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Frame = +3
Query: 27 IRDHIAELRTELETMRSSITSQAREHVRADEVLLTFGASALVERFLRPTQNRNCKVVVAE 206
++ + E+ E E + S R+ EV + ++ R + P ++ + + +
Sbjct: 504 LQKKLKEMEVERERLIESGMIDPRDRTPRPEVDIQVVQDEVLVRVMSPMESHPVRAIF-Q 562
Query: 207 GTDVGESHAMARRL-SNSGVSVTVINSSCVFAVMSRVNKVVVEVQAAMGGG 356
+ E HA ++ SN+G +V C A KV+ + M G
Sbjct: 563 AFEEAEVHAGESKITSNNGTAVHSFIIKCPGAEQQTREKVIAAMSRVMNSG 613
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,760,397
Number of Sequences: 37544
Number of extensions: 356420
Number of successful extensions: 1389
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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