Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b09f
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27994| Best HMM Match : IF-2B (HMM E-Value=5.5e-23)                107   5e-24
SB_14708| Best HMM Match : IF-2B (HMM E-Value=0)                       33   0.18 
SB_38114| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.54 
SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               28   5.1  
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_3530| Best HMM Match : IF-2B (HMM E-Value=9.6e-29)                  28   6.7  
SB_33649| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)                      27   8.8  

>SB_27994| Best HMM Match : IF-2B (HMM E-Value=5.5e-23)
          Length = 296

 Score =  107 bits (258), Expect = 5e-24
 Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 3/198 (1%)
 Frame = +3

Query: 18  REPIRDHIAELRTELETMRSSITSQAREHVRADEVLLTFGASALVERFLR-PTQNRNCKV 194
           R  + D I EL  ELE+   +I +QA EH+ ++EV++T G S  VE FL+   + R   V
Sbjct: 116 RTIVIDAINELIIELESSADNIATQALEHIHSNEVIMTAGKSRTVETFLKNAARKRKFSV 175

Query: 195 VVAEGTDVGESHAMARRLSNSGVSVTVINSSCVFAVMSRVNKVVVEVQAAMGGGAVLGDA 374
           +V EG    +   +A+ L+  G+  T+I  S VFA+MSRVNKV++     M  G +    
Sbjct: 176 IVVEGAPFYQGQELAKSLAKVGIETTIITDSAVFAIMSRVNKVIIGTHVVMADGGLRAVN 235

Query: 375 GLHSVTLAAKYYKIPVVALAPLYRMLPHHLYDPQSFGSLSSPLQTMEYADCGS--DSLQV 548
           G H++ LAAK++ +                  P S     +P   +++++ GS    + +
Sbjct: 236 GAHALALAAKHHSV------------------PDSCNKFVAPNDVLQFSE-GSILSKVDI 276

Query: 549 LAPKFDFVPPDHITLFIT 602
             P FD++PP+ + LFI+
Sbjct: 277 QNPVFDYIPPELVNLFIS 294


>SB_14708| Best HMM Match : IF-2B (HMM E-Value=0)
          Length = 350

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 4/130 (3%)
 Frame = +3

Query: 225 SHAMARRLSNSGVSVTVINSSCVFAVMS--RVNKVVVEVQAAMGGGAVLGDAGLHSVTLA 398
           S   A  L    +  T+I  S V   M   +++ VVV        G      G + + LA
Sbjct: 202 SRLTAYELVYEKIPSTLIADSAVSMAMKTKKISAVVVGADRIACNGDTANKIGTYQLALA 261

Query: 399 AKYYKIPVVALAPLYRMLPHHLYDPQSFGSLSSPLQ--TMEYADCGSDSLQVLAPKFDFV 572
           AK+++IP    AP+  +    +          SPL+  +++     +  + V  P FD  
Sbjct: 262 AKHHEIPFYVAAPVTSIDFSLVNGDAIVIEERSPLELTSVKGIPVAASGIGVWNPAFDVT 321

Query: 573 PPDHITLFIT 602
           P   IT  +T
Sbjct: 322 PAGLITGIVT 331


>SB_38114| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 453 PHHLYDPQSFGSLSSPLQTMEYADCGSDSL 542
           P  L+ P +FG+L  PL T +   CG+D L
Sbjct: 105 PSKLHPPPTFGTLRPPLFTFDRVMCGNDDL 134


>SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 469 TPRASVP-CRRRYRPWSTPI 525
           TPRA+ P CR+ YRPW+  +
Sbjct: 46  TPRATCPHCRKGYRPWNQEV 65


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 124  YSRSGPALWSSGS*GRPRIGTARSSSRKGLTSARVTP 234
            ++R GP     GS G P +G++R +S  GL +   +P
Sbjct: 2005 FTRRGPGSEGGGSTGTPSVGSSRMASDMGLPNISRSP 2041


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 395 EGDGMEARVPKDRAAPHRSLHLDHHLVDPGHHREH 291
           E DG+   + ++       ++ +HH +DPG  REH
Sbjct: 454 EHDGINPMMNREHHGIDPMMNREHHGIDPGMKREH 488



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 401 SGEGDGMEARVPKDRAAPHRSLHLDHHLVDPGHHREH 291
           S E DG+   + K+    +  ++ +HH +DP  +REH
Sbjct: 441 SREHDGIHPGMNKEHDGINPMMNREHHGIDPMMNREH 477


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +3

Query: 39   IAELRTELETMRSSITSQAREHVRADEVLLTFGASALVERFLRPTQNRNCKVVVAEGTDV 218
            +  LRT+ +T  S++    RE       LL  G+S+ + R  RP+     +   +  + +
Sbjct: 902  VRSLRTQRQTSDSAVALAYREEQERANNLLVQGSSSTLPRLSRPSSIATTQGSPSHHSSL 961

Query: 219  GESHAM 236
              SH++
Sbjct: 962  ERSHSV 967


>SB_3530| Best HMM Match : IF-2B (HMM E-Value=9.6e-29)
          Length = 236

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/101 (20%), Positives = 43/101 (42%)
 Frame = +3

Query: 300 VMSRVNKVVVEVQAAMGGGAVLGDAGLHSVTLAAKYYKIPVVALAPLYRMLPHHLYDPQS 479
           V+ +V+ V+V  +  +  G ++   G + + +  K    P   +A  ++ +   LY P +
Sbjct: 125 VIEKVDLVLVGAEGVVESGGIINKIGTYQIAVMTKNANKPFYVVAESFKFV--RLY-PLN 181

Query: 480 FGSLSSPLQTMEYADCGSDSLQVLAPKFDFVPPDHITLFIT 602
              + +  +       G+       P  D+ PP +ITL  T
Sbjct: 182 QEDVPNSSKYKRGTSNGTGH-----PVVDYTPPSYITLLFT 217


>SB_33649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 434 RQCHYRYFVVFSGEGDGMEARVPKDRAAPHRSL 336
           R+   R+     GEG G   R+P  R+AP RS+
Sbjct: 168 REAKRRFVRPSPGEGGGTAERLPPRRSAPSRSM 200


>SB_57032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +1

Query: 469 TPRASVP-CRRRYRPWSTPI 525
           TPRA+ P CR+ Y PW+  +
Sbjct: 46  TPRATCPHCRKGYHPWNQEV 65


>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
          Length = 1936

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 439  CTGCC--PIISTTPRASVPCRRRYR 507
            C G C  P IS  PR   P RR+YR
Sbjct: 1671 CRGVCAFPAISREPRVVFPHRRKYR 1695


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,825,035
Number of Sequences: 59808
Number of extensions: 364334
Number of successful extensions: 1104
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)