Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b07r
         (763 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5IXJ2 Cluster: Putative uncharacterized protein; n=1; ...    34   4.4  
UniRef50_Q98S94 Cluster: DNA repair helicase component of transc...    33   5.8  

>UniRef50_A5IXJ2 Cluster: Putative uncharacterized protein; n=1;
           Mycoplasma agalactiae|Rep: Putative uncharacterized
           protein - Mycoplasma agalactiae
          Length = 222

 Score = 33.9 bits (74), Expect = 4.4
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -3

Query: 221 WFRRIRNDVYTVIKDILKHLWFFDQTFLNLVNLLFKHFKKHLNSIR 84
           +FR+ R D+  +IKDIL      +Q  L++     K+F+K L SI+
Sbjct: 58  FFRKYRKDISALIKDILTKRLTEEQILLDIPKSKRKYFEKKLESIK 103


>UniRef50_Q98S94 Cluster: DNA repair helicase component of
           transcription factor b; n=1; Guillardia theta|Rep: DNA
           repair helicase component of transcription factor b -
           Guillardia theta (Cryptomonas phi)
          Length = 706

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +1

Query: 16  NSNNFIPYEQSCVQNSVFLEFIFLMEFKCFLKCL 117
           N  N I YE S +QNS F + +F++ F+  LKCL
Sbjct: 553 NFRNIIIYENSNIQNSKFFD-LFVLNFELGLKCL 585


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,512,016
Number of Sequences: 1657284
Number of extensions: 12068119
Number of successful extensions: 27113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27105
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)