Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b07r
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    27   0.16 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.5  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    23   2.0  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   4.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.1  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 185 IKDILKHLWFFDQTFL 138
           I D+LKH+WF  + FL
Sbjct: 6   ITDVLKHVWFLSKLFL 21


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 600 IIFII*AFYLGDSALQFYIKILVQLCSNFFFY 505
           I +   AF +    L FY  +++ LC  +F+Y
Sbjct: 212 IYYFYSAFIIFTIHLLFYCVLIILLCIYYFYY 243



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 606 FVIIFII*AFYLGDSALQFYIKILVQLCSNFFFY 505
           F   FII   +       FY   ++ LC  +F+Y
Sbjct: 85  FYCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYY 118


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +2

Query: 335 EFLAISSQWVAFLIHW*FLRSTALTSASVSNI 430
           +F+ IS  WV  +  W F+  +     S  N+
Sbjct: 131 QFIIISKHWVTIMKEWSFMEMSMRNYGSSINM 162


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 10  LKNSNNFIPYEQSCVQNSVFLEFIFLMEFKCFLKC 114
           L  +  F+P EQ C    VF E     ++   +KC
Sbjct: 441 LAYNGGFVPLEQRCNAGLVFDEEKLWCDYPEVVKC 475


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 125 LLFKHFKKHLNSIRKINS 72
           L FK+ + HLN+I +I +
Sbjct: 40  LSFKNIESHLNAISQITN 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,893
Number of Sequences: 336
Number of extensions: 3371
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)